Commit 6a89ea6c authored by Sylvain Thery's avatar Sylvain Thery

Merge branch 'master' of cgogn:~kraemer/CGoGN

parents 327c437b 8c56bdce
......@@ -5,8 +5,6 @@
#include "src/Core/util/DisableStupidWarnings.h"
namespace Eigen {
/** \defgroup Cholesky_Module Cholesky module
*
*
......@@ -24,8 +22,9 @@ namespace Eigen {
#include "src/misc/Solve.h"
#include "src/Cholesky/LLT.h"
#include "src/Cholesky/LDLT.h"
} // namespace Eigen
#ifdef EIGEN_USE_LAPACKE
#include "src/Cholesky/LLT_MKL.h"
#endif
#include "src/Core/util/ReenableStupidWarnings.h"
......
#ifndef EIGEN_CHOLMODSUPPORT_MODULE_H
#define EIGEN_CHOLMODSUPPORT_MODULE_H
#include "SparseCore"
#include "src/Core/util/DisableStupidWarnings.h"
extern "C" {
#include <cholmod.h>
}
/** \ingroup Support_modules
* \defgroup CholmodSupport_Module CholmodSupport module
*
* This module provides an interface to the Cholmod library which is part of the <a href="http://www.cise.ufl.edu/research/sparse/SuiteSparse/">suitesparse</a> package.
* It provides the two following main factorization classes:
* - class CholmodSupernodalLLT: a supernodal LLT Cholesky factorization.
* - class CholmodDecomposiiton: a general L(D)LT Cholesky factorization with automatic or explicit runtime selection of the underlying factorization method (supernodal or simplicial).
*
* For the sake of completeness, this module also propose the two following classes:
* - class CholmodSimplicialLLT
* - class CholmodSimplicialLDLT
* Note that these classes does not bring any particular advantage compared to the built-in
* SimplicialLLT and SimplicialLDLT factorization classes.
*
* \code
* #include <Eigen/CholmodSupport>
* \endcode
*
* In order to use this module, the cholmod headers must be accessible from the include paths, and your binary must be linked to the cholmod library and its dependencies.
* The dependencies depend on how cholmod has been compiled.
* For a cmake based project, you can use our FindCholmod.cmake module to help you in this task.
*
*/
#include "src/misc/Solve.h"
#include "src/misc/SparseSolve.h"
#include "src/CholmodSupport/CholmodSupport.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_CHOLMODSUPPORT_MODULE_H
......@@ -4,24 +4,9 @@
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2007-2011 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 3 of the License, or (at your option) any later version.
//
// Alternatively, you can redistribute it and/or
// modify it under the terms of the GNU General Public License as
// published by the Free Software Foundation; either version 2 of
// the License, or (at your option) any later version.
//
// Eigen is distributed in the hope that it will be useful, but WITHOUT ANY
// WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License or the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License and a copy of the GNU General Public License along with
// Eigen. If not, see <http://www.gnu.org/licenses/>.
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_CORE_H
#define EIGEN_CORE_H
......@@ -34,6 +19,12 @@
// defined e.g. EIGEN_DONT_ALIGN) so it needs to be done before we do anything with vectorization.
#include "src/Core/util/Macros.h"
#include <complex>
// this include file manages BLAS and MKL related macros
// and inclusion of their respective header files
#include "src/Core/util/MKL_support.h"
// if alignment is disabled, then disable vectorization. Note: EIGEN_ALIGN is the proper check, it takes into
// account both the user's will (EIGEN_DONT_ALIGN) and our own platform checks
#if !EIGEN_ALIGN
......@@ -136,7 +127,7 @@
#endif
// MSVC for windows mobile does not have the errno.h file
#if !(defined(_MSC_VER) && defined(_WIN32_WCE))
#if !(defined(_MSC_VER) && defined(_WIN32_WCE)) && !defined(__ARMCC_VERSION)
#define EIGEN_HAS_ERRNO
#endif
......@@ -146,7 +137,6 @@
#include <cstddef>
#include <cstdlib>
#include <cmath>
#include <complex>
#include <cassert>
#include <functional>
#include <iosfwd>
......@@ -167,7 +157,7 @@
#include <intrin.h>
#endif
#if (defined(_CPPUNWIND) || defined(__EXCEPTIONS)) && !defined(EIGEN_NO_EXCEPTIONS)
#if defined(_CPPUNWIND) || defined(__EXCEPTIONS)
#define EIGEN_EXCEPTIONS
#endif
......@@ -175,9 +165,6 @@
#include <new>
#endif
// defined in bits/termios.h
#undef B0
/** \brief Namespace containing all symbols from the %Eigen library. */
namespace Eigen {
......@@ -201,6 +188,8 @@ inline static const char *SimdInstructionSetsInUse(void) {
#endif
}
} // end namespace Eigen
#define STAGE10_FULL_EIGEN2_API 10
#define STAGE20_RESOLVE_API_CONFLICTS 20
#define STAGE30_FULL_EIGEN3_API 30
......@@ -247,6 +236,10 @@ using std::ptrdiff_t;
* \endcode
*/
/** \defgroup Support_modules Support modules [category]
* Category of modules which add support for external libraries.
*/
#include "src/Core/util/Constants.h"
#include "src/Core/util/ForwardDeclarations.h"
#include "src/Core/util/Meta.h"
......@@ -318,15 +311,15 @@ using std::ptrdiff_t;
#include "src/Core/CommaInitializer.h"
#include "src/Core/Flagged.h"
#include "src/Core/ProductBase.h"
#include "src/Core/Product.h"
#include "src/Core/GeneralProduct.h"
#include "src/Core/TriangularMatrix.h"
#include "src/Core/SelfAdjointView.h"
#include "src/Core/SolveTriangular.h"
#include "src/Core/products/GeneralBlockPanelKernel.h"
#include "src/Core/products/Parallelizer.h"
#include "src/Core/products/CoeffBasedProduct.h"
#include "src/Core/products/GeneralBlockPanelKernel.h"
#include "src/Core/products/GeneralMatrixVector.h"
#include "src/Core/products/GeneralMatrixMatrix.h"
#include "src/Core/SolveTriangular.h"
#include "src/Core/products/GeneralMatrixMatrixTriangular.h"
#include "src/Core/products/SelfadjointMatrixVector.h"
#include "src/Core/products/SelfadjointMatrixMatrix.h"
......@@ -347,7 +340,20 @@ using std::ptrdiff_t;
#include "src/Core/ArrayBase.h"
#include "src/Core/ArrayWrapper.h"
} // namespace Eigen
#ifdef EIGEN_USE_BLAS
#include "src/Core/products/GeneralMatrixMatrix_MKL.h"
#include "src/Core/products/GeneralMatrixVector_MKL.h"
#include "src/Core/products/GeneralMatrixMatrixTriangular_MKL.h"
#include "src/Core/products/SelfadjointMatrixMatrix_MKL.h"
#include "src/Core/products/SelfadjointMatrixVector_MKL.h"
#include "src/Core/products/TriangularMatrixMatrix_MKL.h"
#include "src/Core/products/TriangularMatrixVector_MKL.h"
#include "src/Core/products/TriangularSolverMatrix_MKL.h"
#endif // EIGEN_USE_BLAS
#ifdef EIGEN_USE_MKL_VML
#include "src/Core/Assign_MKL.h"
#endif
#include "src/Core/GlobalFunctions.h"
......
......@@ -3,24 +3,9 @@
//
// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 3 of the License, or (at your option) any later version.
//
// Alternatively, you can redistribute it and/or
// modify it under the terms of the GNU General Public License as
// published by the Free Software Foundation; either version 2 of
// the License, or (at your option) any later version.
//
// Eigen is distributed in the hope that it will be useful, but WITHOUT ANY
// WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License or the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License and a copy of the GNU General Public License along with
// Eigen. If not, see <http://www.gnu.org/licenses/>.
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN2SUPPORT_H
#define EIGEN2SUPPORT_H
......@@ -31,9 +16,8 @@
#include "src/Core/util/DisableStupidWarnings.h"
namespace Eigen {
/** \defgroup Eigen2Support_Module Eigen2 support module
/** \ingroup Support_modules
* \defgroup Eigen2Support_Module Eigen2 support module
* This module provides a couple of deprecated functions improving the compatibility with Eigen2.
*
* To use it, define EIGEN2_SUPPORT before including any Eigen header
......@@ -56,13 +40,29 @@ namespace Eigen {
#include "src/Eigen2Support/MathFunctions.h"
} // namespace Eigen
#include "src/Core/util/ReenableStupidWarnings.h"
// Eigen2 used to include iostream
#include<iostream>
#define EIGEN_USING_MATRIX_TYPEDEFS_FOR_TYPE_AND_SIZE(TypeSuffix, SizeSuffix) \
using Eigen::Matrix##SizeSuffix##TypeSuffix; \
using Eigen::Vector##SizeSuffix##TypeSuffix; \
using Eigen::RowVector##SizeSuffix##TypeSuffix;
#define EIGEN_USING_MATRIX_TYPEDEFS_FOR_TYPE(TypeSuffix) \
EIGEN_USING_MATRIX_TYPEDEFS_FOR_TYPE_AND_SIZE(TypeSuffix, 2) \
EIGEN_USING_MATRIX_TYPEDEFS_FOR_TYPE_AND_SIZE(TypeSuffix, 3) \
EIGEN_USING_MATRIX_TYPEDEFS_FOR_TYPE_AND_SIZE(TypeSuffix, 4) \
EIGEN_USING_MATRIX_TYPEDEFS_FOR_TYPE_AND_SIZE(TypeSuffix, X) \
#define EIGEN_USING_MATRIX_TYPEDEFS \
EIGEN_USING_MATRIX_TYPEDEFS_FOR_TYPE(i) \
EIGEN_USING_MATRIX_TYPEDEFS_FOR_TYPE(f) \
EIGEN_USING_MATRIX_TYPEDEFS_FOR_TYPE(d) \
EIGEN_USING_MATRIX_TYPEDEFS_FOR_TYPE(cf) \
EIGEN_USING_MATRIX_TYPEDEFS_FOR_TYPE(cd)
#define USING_PART_OF_NAMESPACE_EIGEN \
EIGEN_USING_MATRIX_TYPEDEFS \
using Eigen::Matrix; \
......
......@@ -9,8 +9,7 @@
#include "Jacobi"
#include "Householder"
#include "LU"
namespace Eigen {
#include "Geometry"
/** \defgroup Eigenvalues_Module Eigenvalues module
*
......@@ -35,8 +34,11 @@ namespace Eigen {
#include "src/Eigenvalues/ComplexSchur.h"
#include "src/Eigenvalues/ComplexEigenSolver.h"
#include "src/Eigenvalues/MatrixBaseEigenvalues.h"
} // namespace Eigen
#ifdef EIGEN_USE_LAPACKE
#include "src/Eigenvalues/RealSchur_MKL.h"
#include "src/Eigenvalues/ComplexSchur_MKL.h"
#include "src/Eigenvalues/SelfAdjointEigenSolver_MKL.h"
#endif
#include "src/Core/util/ReenableStupidWarnings.h"
......
......@@ -13,8 +13,6 @@
#define M_PI 3.14159265358979323846
#endif
namespace Eigen {
/** \defgroup Geometry_Module Geometry module
*
*
......@@ -58,8 +56,6 @@ namespace Eigen {
#include "src/Eigen2Support/Geometry/All.h"
#endif
} // namespace Eigen
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_GEOMETRY_MODULE_H
......
......@@ -5,8 +5,6 @@
#include "src/Core/util/DisableStupidWarnings.h"
namespace Eigen {
/** \defgroup Householder_Module Householder module
* This module provides Householder transformations.
*
......@@ -19,8 +17,6 @@ namespace Eigen {
#include "src/Householder/HouseholderSequence.h"
#include "src/Householder/BlockHouseholder.h"
} // namespace Eigen
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_HOUSEHOLDER_MODULE_H
......
#ifndef EIGEN_ITERATIVELINEARSOLVERS_MODULE_H
#define EIGEN_ITERATIVELINEARSOLVERS_MODULE_H
#include "SparseCore"
#include "OrderingMethods"
#include "src/Core/util/DisableStupidWarnings.h"
/** \ingroup Sparse_modules
* \defgroup IterativeLinearSolvers_Module IterativeLinearSolvers module
*
* This module currently provides iterative methods to solve problems of the form \c A \c x = \c b, where \c A is a squared matrix, usually very large and sparse.
* Those solvers are accessible via the following classes:
* - ConjugateGradient for selfadjoint (hermitian) matrices,
* - BiCGSTAB for general square matrices.
*
* These iterative solvers are associated with some preconditioners:
* - IdentityPreconditioner - not really useful
* - DiagonalPreconditioner - also called JAcobi preconditioner, work very well on diagonal dominant matrices.
* - IncompleteILUT - incomplete LU factorization with dual thresholding
*
* Such problems can also be solved using the direct sparse decomposition modules: SparseCholesky, CholmodSupport, UmfPackSupport, SuperLUSupport.
*
* \code
* #include <Eigen/IterativeLinearSolvers>
* \endcode
*/
#include "src/misc/Solve.h"
#include "src/misc/SparseSolve.h"
#include "src/IterativeLinearSolvers/IterativeSolverBase.h"
#include "src/IterativeLinearSolvers/BasicPreconditioners.h"
#include "src/IterativeLinearSolvers/ConjugateGradient.h"
#include "src/IterativeLinearSolvers/BiCGSTAB.h"
#include "src/IterativeLinearSolvers/IncompleteLUT.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_ITERATIVELINEARSOLVERS_MODULE_H
......@@ -5,8 +5,6 @@
#include "src/Core/util/DisableStupidWarnings.h"
namespace Eigen {
/** \defgroup Jacobi_Module Jacobi module
* This module provides Jacobi and Givens rotations.
*
......@@ -21,8 +19,6 @@ namespace Eigen {
#include "src/Jacobi/Jacobi.h"
} // namespace Eigen
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_JACOBI_MODULE_H
......
......@@ -5,8 +5,6 @@
#include "src/Core/util/DisableStupidWarnings.h"
namespace Eigen {
/** \defgroup LU_Module LU module
* This module includes %LU decomposition and related notions such as matrix inversion and determinant.
* This module defines the following MatrixBase methods:
......@@ -23,6 +21,9 @@ namespace Eigen {
#include "src/misc/Image.h"
#include "src/LU/FullPivLU.h"
#include "src/LU/PartialPivLU.h"
#ifdef EIGEN_USE_LAPACKE
#include "src/LU/PartialPivLU_MKL.h"
#endif
#include "src/LU/Determinant.h"
#include "src/LU/Inverse.h"
......@@ -34,8 +35,6 @@ namespace Eigen {
#include "src/Eigen2Support/LU.h"
#endif
} // namespace Eigen
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_LU_MODULE_H
......
......@@ -15,8 +15,6 @@
#include "Eigenvalues"
#include "Geometry"
namespace Eigen {
/** \defgroup LeastSquares_Module LeastSquares module
* This module provides linear regression and related features.
*
......@@ -27,8 +25,6 @@ namespace Eigen {
#include "src/Eigen2Support/LeastSquares.h"
} // namespace Eigen
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN2_SUPPORT
......
#ifndef EIGEN_ORDERINGMETHODS_MODULE_H
#define EIGEN_ORDERINGMETHODS_MODULE_H
#include "SparseCore"
#include "src/Core/util/DisableStupidWarnings.h"
/** \ingroup Sparse_modules
* \defgroup OrderingMethods_Module OrderingMethods module
*
* This module is currently for internal use only.
*
*
* \code
* #include <Eigen/OrderingMethods>
* \endcode
*/
#include "src/OrderingMethods/Amd.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_ORDERINGMETHODS_MODULE_H
#ifndef EIGEN_PASTIXSUPPORT_MODULE_H
#define EIGEN_PASTIXSUPPORT_MODULE_H
#include "SparseCore"
#include "src/Core/util/DisableStupidWarnings.h"
#include <complex.h>
extern "C" {
#include <pastix_nompi.h>
#include <pastix.h>
}
#ifdef complex
#undef complex
#endif
/** \ingroup Support_modules
* \defgroup PaStiXSupport_Module PaStiXSupport module
*
* This module provides an interface to the <a href="http://pastix.gforge.inria.fr/">PaSTiX</a> library.
* PaSTiX is a general \b supernodal, \b parallel and \b opensource sparse solver.
* It provides the two following main factorization classes:
* - class PastixLLT : a supernodal, parallel LLt Cholesky factorization.
* - class PastixLDLT: a supernodal, parallel LDLt Cholesky factorization.
* - class PastixLU : a supernodal, parallel LU factorization (optimized for a symmetric pattern).
*
* \code
* #include <Eigen/PaStiXSupport>
* \endcode
*
* In order to use this module, the PaSTiX headers must be accessible from the include paths, and your binary must be linked to the PaSTiX library and its dependencies.
* The dependencies depend on how PaSTiX has been compiled.
* For a cmake based project, you can use our FindPaSTiX.cmake module to help you in this task.
*
*/
#include "src/misc/Solve.h"
#include "src/misc/SparseSolve.h"
#include "src/PaStiXSupport/PaStiXSupport.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_PASTIXSUPPORT_MODULE_H
#ifndef EIGEN_PARDISOSUPPORT_MODULE_H
#define EIGEN_PARDISOSUPPORT_MODULE_H
#include "SparseCore"
#include "src/Core/util/DisableStupidWarnings.h"
#include <mkl_pardiso.h>
#include <unsupported/Eigen/SparseExtra>
/** \ingroup Support_modules
* \defgroup PardisoSupport_Module PardisoSupport module
*
* This module brings support for the Intel(R) MKL PARDISO direct sparse solvers.
*
* \code
* #include <Eigen/PardisoSupport>
* \endcode
*
* In order to use this module, the MKL headers must be accessible from the include paths, and your binary must be linked to the MKL library and its dependencies.
* See this \ref TopicUsingIntelMKL "page" for more information on MKL-Eigen integration.
*
*/
#include "src/PardisoSupport/PardisoSupport.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_PARDISOSUPPORT_MODULE_H
......@@ -9,8 +9,6 @@
#include "Jacobi"
#include "Householder"
namespace Eigen {
/** \defgroup QR_Module QR module
*
*
......@@ -28,13 +26,15 @@ namespace Eigen {
#include "src/QR/HouseholderQR.h"
#include "src/QR/FullPivHouseholderQR.h"
#include "src/QR/ColPivHouseholderQR.h"
#ifdef EIGEN_USE_LAPACKE
#include "src/QR/HouseholderQR_MKL.h"
#include "src/QR/ColPivHouseholderQR_MKL.h"
#endif
#ifdef EIGEN2_SUPPORT
#include "src/Eigen2Support/QR.h"
#endif
} // namespace Eigen
#include "src/Core/util/ReenableStupidWarnings.h"
#ifdef EIGEN2_SUPPORT
......
......@@ -7,15 +7,13 @@
#include "src/Core/util/DisableStupidWarnings.h"
namespace Eigen {
/** \defgroup SVD_Module SVD module
*
*
*
* This module provides SVD decomposition for (currently) real matrices.
* This module provides SVD decomposition for matrices (both real and complex).
* This decomposition is accessible via the following MatrixBase method:
* - MatrixBase::svd()
* - MatrixBase::jacobiSvd()
*
* \code
* #include <Eigen/SVD>
......@@ -24,14 +22,15 @@ namespace Eigen {
#include "src/misc/Solve.h"
#include "src/SVD/JacobiSVD.h"
#if defined(EIGEN_USE_LAPACKE) && !defined(EIGEN_USE_LAPACKE_STRICT)
#include "src/SVD/JacobiSVD_MKL.h"
#endif
#include "src/SVD/UpperBidiagonalization.h"