Skip to content

GitLab

M
MultiCube
Commit 256c8146 authored by lafabregue's avatar lafabregue
Browse files
Options

add the possiblity to compare an image with another in the imagePnale popupMenu

parent b6a7bf3f
Hide whitespace changes
Inline Side-by-side
Showing with 295 additions and 109 deletions
src/mustic/gui/ROIToolsFrame.java
View file @ 256c8146
......@@ -127,7 +127,7 @@ public class ROIToolsFrame extends JInternalFrame implements ActionListener {
private Vector<RegionOfInterest> rois;
/** Needed for the modification of the transparency */
private int sliderValue = (int) ImagePanel.transparency;
private int sliderValue = (int) ImagePanel.drawingTransparency;
/**
* Create the interface of the module.
......@@ -618,7 +618,7 @@ public class ROIToolsFrame extends JInternalFrame implements ActionListener {
JPanel jp_main = new JPanel(new BorderLayout());
int answer;
float currentTransparency = ImagePanel.transparency;
float currentTransparency = ImagePanel.drawingTransparency;
JSlider js_transparency = new JSlider(SwingConstants.HORIZONTAL, 0,
100, 50);
......
src/mustic/gui/dialog/classifier/ConstraintsSelectionDialog.java
View file @ 256c8146
......@@ -811,80 +811,80 @@ public class ConstraintsSelectionDialog extends JInternalFrame implements Zoomab
return;
}
this.viewer = new PyramidImageViewer(img.getFilename(), true);
// if (this.image != null && !this.image.getPath().equals(img.getPath()))
// this.clear();
// this.width = img.getWidth();
// this.imageSource = new BufferedImage(img.getWidth(), img.getHeight(), BufferedImage.TYPE_INT_RGB);
// this.imagePoints = new BufferedImage(img.getWidth(), img.getHeight(), BufferedImage.TYPE_INT_RGB);
//
// double data[][][] = img.load(0, 0, img.getWidth(), img.getHeight());
// double[] max = new double[data.length];
// double[] min = new double[data.length];
//
// // for each band
// for (int i = 0; i < data.length; i++) {
// max[i] = min[i] = data[i][0][0];
// // for each column
// for (int x = 0; x < data[i].length; x++) {
// // for each line
// for (int y = 0; y < data[i][x].length; y++) {
// // searching the max and min value of the band
// max[i] = Math.max(max[i], data[i][x][y]);
// min[i] = Math.min(min[i], data[i][x][y]);
// }
// }
// }
// short[][][] dataView = new short[data.length][data[0]
// .length][data[0][0].length]; // the values to display
// double values[][] = data[0];
// /*
// * max contains the max value for r g b, we can create a valid
// * representation of data. the data values must be between 0 and 255 to
// * be valid, so let's convert them if needed
// */
//
// int[] bands = new int[3];
// bands[0] = img.r;
// bands[1] = img.g;
// bands[2] = img.b;
//
// // we use at most 3 bands
// int nbUsedBand = img.getNbBands();
// if (nbUsedBand > 3) {
// nbUsedBand = 3;
// }
// for (int b = 0; b < nbUsedBand; b++) {
// int i = bands[b];
// for (int x = 0; x < data[0].length; x++) {
// for (int y = 0; y < data[0][0].length; y++) {
// if (data[i][x][y] > 0) {
// // convert only if needed to avoid color deformation on
// // 8 bits images
// if (max[i] <= 255 && min[b] >= 0) {
// dataView[i][x][y] = (short) data[b][x][y];
// } else {
// dataView[i][x][y] = (short) (255 *
// (data[i][x][y] - min[b]) / (max[b] - min[b]));
// }
// } else {
// dataView[i][x][y] = 0;
// }
// }
// }
// }
// // pixels of the image to display
// for (int x = 0; x < values.length; x++) {
// for (int y = 0; y < values[0].length; y++) {
//
// int pixel = (int) values[x][y] << 24 | dataView[bands[0]][x][y] << 16
// | dataView[bands[1]][x][y] << 8 | dataView[bands[2]][x][y];
//
// imageSource.setRGB(x, y, pixel);
// imagePoints.setRGB(x, y, pixel);
// }
// }
// this.viewer = new PyramidImageViewer(img.getFilename(), true);
if (this.image != null && !this.image.getPath().equals(img.getPath()))
this.clear();
this.width = img.getWidth();
this.imageSource = new BufferedImage(img.getWidth(), img.getHeight(), BufferedImage.TYPE_INT_RGB);
this.imagePoints = new BufferedImage(img.getWidth(), img.getHeight(), BufferedImage.TYPE_INT_RGB);
double data[][][] = img.load(0, 0, img.getWidth(), img.getHeight());
double[] max = new double[data.length];
double[] min = new double[data.length];
// for each band
for (int i = 0; i < data.length; i++) {
max[i] = min[i] = data[i][0][0];
// for each column
for (int x = 0; x < data[i].length; x++) {
// for each line
for (int y = 0; y < data[i][x].length; y++) {
// searching the max and min value of the band
max[i] = Math.max(max[i], data[i][x][y]);
min[i] = Math.min(min[i], data[i][x][y]);
}
}
}
short[][][] dataView = new short[data.length][data[0]
.length][data[0][0].length]; // the values to display
double values[][] = data[0];
/*
* max contains the max value for r g b, we can create a valid
* representation of data. the data values must be between 0 and 255 to
* be valid, so let's convert them if needed
*/
int[] bands = new int[3];
bands[0] = img.r;
bands[1] = img.g;
bands[2] = img.b;
// we use at most 3 bands
int nbUsedBand = img.getNbBands();
if (nbUsedBand > 3) {
nbUsedBand = 3;
}
for (int b = 0; b < nbUsedBand; b++) {
int i = bands[b];
for (int x = 0; x < data[0].length; x++) {
for (int y = 0; y < data[0][0].length; y++) {
if (data[i][x][y] > 0) {
// convert only if needed to avoid color deformation on
// 8 bits images
if (max[i] <= 255 && min[b] >= 0) {
dataView[i][x][y] = (short) data[b][x][y];
} else {
dataView[i][x][y] = (short) (255 *
(data[i][x][y] - min[b]) / (max[b] - min[b]));
}
} else {
dataView[i][x][y] = 0;
}
}
}
}
// pixels of the image to display
for (int x = 0; x < values.length; x++) {
for (int y = 0; y < values[0].length; y++) {
int pixel = (int) values[x][y] << 24 | dataView[bands[0]][x][y] << 16
| dataView[bands[1]][x][y] << 8 | dataView[bands[2]][x][y];
imageSource.setRGB(x, y, pixel);
imagePoints.setRGB(x, y, pixel);
}
}
this.image = img;
doZoomedOp();
......
src/mustic/gui/dialog/classifier/ConstraintsSelectionInternalFrame.java
View file @ 256c8146
......@@ -10,6 +10,7 @@ import java.awt.Graphics;
import java.awt.Graphics2D;
import java.awt.GridLayout;
import java.awt.Image;
import java.awt.Point;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.FocusEvent;
......@@ -171,6 +172,7 @@ public class ConstraintsSelectionInternalFrame extends JDialog {
public ConstraintsSelectionInternalFrame(ImagePanel imagePanel, Data data) {
super();
mainPanel = new JPanel(new BorderLayout());
this.imagePanel = imagePanel;
if (data != null) {
// case of Data provided
......@@ -179,11 +181,12 @@ public class ConstraintsSelectionInternalFrame extends JDialog {
this.data = data;
} else {
// otherwise we base our estimation on the image
StreamedImageReaderWrapper reader = new StreamedImageReaderWrapper(imagePanel.getRawImage().getPath());
minDistance = 0;
maxDistance = 0;
for (int i = 0 ; i < reader.getMaxValues().length ; i++) {
double d = (reader.getMaxValues()[i] - reader.getMinValues()[i]);
for (int i = 0 ; i < imagePanel.getRawImage().getMaxValues().length ; i++) {
double d = (imagePanel.getRawImage().getMaxValues()[i]
- imagePanel.getRawImage().getMinValues()[i]);
maxDistance += d*d;
}
maxDistance = Math.sqrt(maxDistance);
......@@ -306,22 +309,23 @@ public class ConstraintsSelectionInternalFrame extends JDialog {
public void mouseClicked(MouseEvent e) {
if (imagePanel.getDisplayedImage() != null) {
// point coordinates relative to img
int x = (int) ((e.getX()
- (int) ((displayPanel.getWidth() - (mNew.getWidth())) / 2.0)) / mZoomRate);
int y = (int) ((e.getY()
- (int) ((displayPanel.getHeight() - (mNew.getHeight())) / 2.0)) / mZoomRate);
if (x >= 0 && y >= 0 && x < imageSource.getWidth() * mZoomRate
&& y < imageSource.getHeight() /* mZoomRate*/) {
// int x = (int) ((e.getX()
// - (int) ((displayPanel.getWidth() - (mNew.getWidth())) / 2.0)) / mZoomRate);
// int y = (int) ((e.getY()
// - (int) ((displayPanel.getHeight() - (mNew.getHeight())) / 2.0)) / mZoomRate);
Point p = imagePanel.converteCoordinatesToImage(e.getX(), e.getY());
if (p.x >= 0 && p.y >= 0 && p.x < imagePanel.getRawImage().getWidth()
&& p.y < imagePanel.getRawImage().getHeight() /* mZoomRate*/) {
switch (currentStep) {
case MustLink_step1:
case CannotLink_step1:
case Label_step1:
addFirstPixel(x, y);
addFirstPixel(p.x, p.y);
break;
case MustLink_step2:
case CannotLink_step2:
addSecondPixel(x, y);
addSecondPixel(p.x, p.y);
break;
default:
// we don't refresh if not a valid step
......
src/mustic/gui/panels/ImagePanel.java
View file @ 256c8146
......@@ -11,6 +11,7 @@ import jcl.data.mask.Mask;
import mustic.gui.*;
import mustic.io.RawImage;
import mustic.io.roi.RegionOfInterest;
import mustic.utils.filters.ImageFileFilter;
import mustic.utils.filters.ZipFileFilter;
import mustic.utils.image.BufferedImageHelper;
import mustic.utils.image.BufferedImageViewer;
......@@ -28,7 +29,7 @@ public class ImagePanel extends JPanel implements Zoomable {
private static final long serialVersionUID = 1L;
/** The transparency must be between 0.0 and 1.0 */
public static float transparency = new Float(0.50);
public static float drawingTransparency = new Float(0.50);
protected JMenuItem classifyAll = null;
......@@ -63,6 +64,21 @@ public class ImagePanel extends JPanel implements Zoomable {
/** zoom step */
private float mZoomStep = 0.7f;
/** transparency level */
private float transparencyStep = 0.03f;
/** transparency of the image */
private float transparency = 1;
/** test if T key is pressed for transparency */
private boolean keyTPressed = false;
/** test if Y key is pressed for compared image transparency */
private boolean keyYPressed = false;
/** transparency of the compared image */
private float comparedImageTransparency = 0.5f;
private ClassList pl_label = null;
......@@ -78,6 +94,7 @@ public class ImagePanel extends JPanel implements Zoomable {
/** Attributes to draw elements on the screen */
private Point clickedPoint = null;
/**
* Create a new ImagePanel from a BufferedImage.
......@@ -178,6 +195,24 @@ public class ImagePanel extends JPanel implements Zoomable {
displayPanel.decreaseZoomBoxArea();
}
}
// transparency of the image
else if(keyTPressed) {
if (e.getUnitsToScroll() > 0) {
transparency += transparencyStep;
} else {
transparency -= transparencyStep;
}
transparencyChanged();
}
// transparency of the compared image
else if(keyYPressed) {
if (e.getUnitsToScroll() > 0) {
comparedImageTransparency += transparencyStep;
} else {
comparedImageTransparency -= transparencyStep;
}
transparencyChanged();
}
// zoom in image
else {
if (e.getUnitsToScroll() > 0) {
......@@ -194,12 +229,14 @@ public class ImagePanel extends JPanel implements Zoomable {
JMenuItem menuROI = new JMenuItem("ROI tools...");
JMenuItem menuResult = new JMenuItem("Open result...");
JMenuItem menuInfo = new JMenuItem("Image properties...");
JMenuItem menuCompare = new JMenuItem("Compare with image...");
JMenuItem menuClose = new JMenuItem("Close");
popupMenu.add(menuSeg);
popupMenu.add(menuROI);
popupMenu.add(menuResult);
popupMenu.add(menuInfo);
popupMenu.add(menuCompare);
popupMenu.add(menuClose);
this.displayPanel.addMouseListener(new MouseAdapter() {
......@@ -270,6 +307,13 @@ public class ImagePanel extends JPanel implements Zoomable {
}
});
menuCompare.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
openComparedImage();
}
});
displayPanel.addComponentListener(new ComponentListener() {
@Override
public void componentResized(ComponentEvent e) {
......@@ -337,20 +381,88 @@ public class ImagePanel extends JPanel implements Zoomable {
if(e.getKeyCode() == KeyEvent.VK_H) {
//TODO add
}
// for transparency
if(e.getKeyCode() == KeyEvent.VK_T) {
keyTPressed = true;
}
// for compared image transparency
if(e.getKeyCode() == KeyEvent.VK_Y) {
keyYPressed = true;
}
}
@Override
public void keyReleased(KeyEvent e) {
// for transparency
if(e.getKeyCode() == KeyEvent.VK_T) {
keyTPressed = false;
}
// for compared image transparency
if(e.getKeyCode() == KeyEvent.VK_Y) {
keyYPressed = false;
}
}
});
this.displayPanel.setFocusable(true);
}
/**
* Notify the viewer that the transparency has changed
*/
private void transparencyChanged() {
if (transparency > 1) {
transparency = 1;
}
if (transparency < 0) {
transparency = 0;
}
if (comparedImageTransparency > 1) {
comparedImageTransparency = 1;
}
if (comparedImageTransparency < 0) {
comparedImageTransparency = 0;
}
viewer.adjustTransparency(transparency, comparedImageTransparency);
displayPanel.repaint();
}
private void openComparedImage() {
JFileChooser fileChooser;
if (MainFrame.getInstance().getCurrentDirectory() == null) {
fileChooser = new JFileChooser();
MainFrame.getInstance().setCurrentDirectory(fileChooser.getCurrentDirectory());
}
else {
fileChooser = new JFileChooser(MainFrame.getInstance().getCurrentDirectory());
}
ImageFileFilter filter = new ImageFileFilter();
fileChooser.addChoosableFileFilter(filter);
fileChooser.setFileFilter(filter);
fileChooser.setAcceptAllFileFilterUsed(true);
fileChooser.setMultiSelectionEnabled(false);
int returnVal = fileChooser.showOpenDialog(this);
if (returnVal == JFileChooser.APPROVE_OPTION) {
MainFrame.getProgressStatus().setMessage("loading file...");
this.setCursor(new java.awt.Cursor(java.awt.Cursor.WAIT_CURSOR));
viewer.addComparedImage(new RawImage(fileChooser.getSelectedFile()));
this.session.getBirdViewPanel().syncImage();
}
this.setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
MainFrame.getProgressStatus().reset();
}
public static void setNewTransparency(float nT) {
ImagePanel.transparency = nT;
ImagePanel.drawingTransparency = nT;
}
private void applyMask() {
......@@ -377,7 +489,7 @@ public class ImagePanel extends JPanel implements Zoomable {
/** Initialise the transparency */
float[] compo = new float[4];
c.getColorComponents(compo);
Color clr = new Color(c.getColorSpace(), compo, ImagePanel.transparency);
Color clr = new Color(c.getColorSpace(), compo, ImagePanel.drawingTransparency);
Graphics g = img.getGraphics();
g.setColor(clr);
......@@ -401,7 +513,7 @@ public class ImagePanel extends JPanel implements Zoomable {
/** Initialise the transparency */
float[] compo = new float[4];
c.getColorComponents(compo);
Color clr = new Color(c.getColorSpace(), compo, ImagePanel.transparency);
Color clr = new Color(c.getColorSpace(), compo, ImagePanel.drawingTransparency);
g.setColor(clr);
g.drawLine(x, y, x1, y1);
......@@ -454,7 +566,7 @@ public class ImagePanel extends JPanel implements Zoomable {
/** Initialise the transparency */
float[] compo = new float[4];
c.getColorComponents(compo);
Color clr = new Color(c.getColorSpace(), compo, ImagePanel.transparency);
Color clr = new Color(c.getColorSpace(), compo, ImagePanel.drawingTransparency);
Graphics g = img.getGraphics();
g.setColor(clr);
......@@ -593,7 +705,7 @@ public class ImagePanel extends JPanel implements Zoomable {
/** Initialise the transparency */
compo = c.getColorComponents(compo);
c = new Color(c.getColorSpace(), compo, ImagePanel.transparency);
c = new Color(c.getColorSpace(), compo, ImagePanel.drawingTransparency);
g.setColor(c);
......@@ -1048,7 +1160,7 @@ public class ImagePanel extends JPanel implements Zoomable {
* x coordinate of the pixel in the image
* @return coordinate in the screen
*/
private Point converteCoordinatesToScreen(int x, int y) {
public Point converteCoordinatesToScreen(int x, int y) {
int sx = (int) ((x - currentTopLeft.x) * getZoomRate());
int sy = (int) ((y - currentTopLeft.y) * getZoomRate());
return new Point(sx, sy);
......@@ -1062,7 +1174,7 @@ public class ImagePanel extends JPanel implements Zoomable {
* x coordinate of the pixel in the screen
* @return coordinate in the image
*/
private Point converteCoordinatesToImage(int x, int y) {
public Point converteCoordinatesToImage(int x, int y) {
int sx = (int) (x / getZoomRate()) + currentTopLeft.x;
int sy = (int) (y / getZoomRate()) + currentTopLeft.y;
return new Point(sx, sy);
......
src/mustic/utils/image/BufferedImageHelper.java
View file @ 256c8146
......@@ -244,22 +244,53 @@ public class BufferedImageHelper {
* the first image
* @param image2
* the second image
* @param transparency1
* transparency to apply to image 1
* @param transparency2
* transparency to apply to image 2
* @return the average of image1 and image2
*/
public static BufferedImage averagedBufferedImage(BufferedImage image1, BufferedImage image2) {
y */
public static BufferedImage averagedBufferedImage(BufferedImage image1, BufferedImage image2,
float transparency1, float transparency2) {
if (image1.getHeight() != image2.getHeight() ||
image1.getWidth() != image2.getWidth()) {
throw new IndexOutOfBoundsException("the BufferedImage shouyld have the same dimensions");
throw new IndexOutOfBoundsException("the BufferedImage should have the same dimensions");
}
BufferedImage result = new BufferedImage(image1.getWidth(), image1.getHeight(),
BufferedImage.TYPE_INT_RGB);
float averageFactor = transparency1 + transparency2;
for(int x = 0 ; x < image1.getWidth() ; x++) {
for(int y = 0 ; y < image1.getHeight() ; y++) {
Color c1 = new Color(image1.getRGB(x, y));
Color c2 = new Color(image2.getRGB(x, y));
Color c = new Color((c1.getRed()+c2.getRed())/2,
(c1.getGreen()+c2.getGreen())/2,
(c1.getBlue()+c2.getBlue())/2);
Color c = new Color((int) ((c1.getRed() * transparency1 + c2.getRed() * transparency2) / averageFactor),
(int) ((c1.getGreen() * transparency1 + c2.getGreen() * transparency2) / averageFactor),
(int) ((c1.getBlue() * transparency1 + c2.getBlue() * transparency2) / averageFactor));
result.setRGB(x, y, c.getRGB());
}
}
return result;
}
/**
* Create a new BufferedImage corresponding to an image with a transparency factor
*
* @param image
* the origin image
* @param transparency
* the transparency factor
* @return the image with transparency applied
*/
public static BufferedImage applyTransparency(BufferedImage image, float transparency) {
BufferedImage result = new BufferedImage(image.getWidth(), image.getHeight(),
BufferedImage.TYPE_INT_RGB);
for(int x = 0 ; x < image.getWidth() ; x++) {
for(int y = 0 ; y < image.getHeight() ; y++) {
Color c2 = new Color(image.getRGB(x, y));
Color c = new Color((int) (c2.getRed() * transparency),
(int) (c2.getGreen() * transparency),
(int) (c2.getBlue() * transparency));
result.setRGB(x, y, c.getRGB());
}
}
......
src/mustic/utils/image/BufferedImageViewer.java
View file @ 256c8146
......@@ -253,16 +253,21 @@ public class BufferedImageViewer extends ImageViewer {
screen = op.filter(screen, null);
//mScreenImage = op.filter(this.mScreenImage, null).getSubimage(0, 0, width, height);
if (comparedImage == null) {
screen = BufferedImageHelper.applyTransparency(screen, transparency);
}
if (saved) {
realX = x;
realY = y;
mScreenImage = screen;
}
if (comparedImage != null) {
BufferedImage scr2 = comparedImage.getScreenImage(x, y, width, height, zoomRate, saved);
return BufferedImageHelper.averagedBufferedImage(screen, scr2);
}
return BufferedImageHelper.averagedBufferedImage(screen, scr2,
transparency, comparedImageTransparency);
}
return screen;
}
......@@ -271,7 +276,8 @@ public class BufferedImageViewer extends ImageViewer {
public BufferedImage getScreenImage() {
if (comparedImage != null) {
BufferedImage scr2 = comparedImage.getScreenImage();
return BufferedImageHelper.averagedBufferedImage(mScreenImage, scr2);
return BufferedImageHelper.averagedBufferedImage(mScreenImage, scr2,
transparency, comparedImageTransparency);
}
return mScreenImage;
......
src/mustic/utils/image/ImageViewer.java
View file @ 256c8146
......@@ -178,8 +178,33 @@ public abstract class ImageViewer {
this.maxValues = maxValues;
}
public void adjustTransparency(float firstImage, float secondImage) {
/**
* Change the transparency level for each image.
* If a transparency factor is bellow 0 ore above 1 it is truncated
*
* @param t1
* the first image transparency factor
* @param t2
* the second image transparency factor
*/
public void adjustTransparency(float t1, float t2) {
transparency = t1;
comparedImageTransparency = t2;
if (transparency > 1) {
transparency = 1;