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Commit 06e06689 authored by Pierre Kraemer's avatar Pierre Kraemer
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SuperLU update in OpenNL + debug in renderTopoSurface plugin

parent fc33bdaf
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CMakeLists.txt
View file @ 06e06689
......@@ -33,7 +33,7 @@ find_package(Boost COMPONENTS regex thread system REQUIRED)
find_package(ZLIB REQUIRED)
find_package(LibXml2 REQUIRED)
find_package(GLEW REQUIRED)
find_package(SuiteSparse REQUIRED)
#find_package(SuiteSparse REQUIRED)
IF (DEFINED ASSERTON)
add_definitions(-DCGOGN_ASSERT_BOOL=${ASSERTON})
......@@ -73,7 +73,7 @@ SET (CGoGN_EXT_INCLUDES
${ZLIB_INCLUDE_DIRS}
${LIBXML2_INCLUDE_DIR}
${Boost_INCLUDE_DIRS}
# ${SUITESPARSE_INCLUDE_DIRS}
)
# define libs for external libs
......@@ -86,7 +86,7 @@ SET (CGoGN_EXT_LIBS
${Boost_SYSTEM_LIBRARY}
${Boost_REGEX_LIBRARY}
${Boost_THREAD_LIBRARY}
${SUITESPARSE_LIBRARIES}
# ${SUITESPARSE_LIBRARIES}
)
#optionnal libs
......
SCHNApps/CMakeLists.txt
View file @ 06e06689
......@@ -18,6 +18,8 @@ find_package(Qt4 REQUIRED)
find_package(QGLViewer REQUIRED)
find_package(PythonLibs 2.7 REQUIRED)
find_package(SuiteSparse REQUIRED)
find_package(SuperLU REQUIRED)
SET( QT_USE_QTOPENGL TRUE )
SET( QT_USE_QTXML TRUE )
......@@ -68,6 +70,7 @@ SET (EXT_INCLUDES
${QGLVIEWER_INCLUDE_DIR}
${PYTHON_INCLUDE_DIRS}
${SUITESPARSE_INCLUDE_DIRS}
${SUPERLU_INCLUDE_DIRS}
)
# define libs for external libs
......@@ -85,6 +88,7 @@ SET (EXT_LIBS
${QGLVIEWER_LIBRARIES}
${PYTHON_LIBRARIES}
${SUITESPARSE_LIBRARIES}
${SUPERLU_LIBRARIES}
)
......
SCHNApps/Plugins/differentialProperties/src/computeNormalDialog.cpp
View file @ 06e06689
......@@ -28,7 +28,6 @@ ComputeNormalDialog::ComputeNormalDialog(Window* w) :
{
QListWidgetItem* item = new QListWidgetItem(map->getName(), mapList);
item->setCheckState(Qt::Unchecked);
connect(map, SIGNAL(attributeModified(unsigned int, QString)), this, SLOT(attributeModified(unsigned int, QString)));
}
}
......
SCHNApps/Plugins/renderTopoSurface/src/renderTopoSurface.cpp
View file @ 06e06689
......@@ -95,6 +95,8 @@ void RenderTopoSurfacePlugin::viewLinked(View* view, Plugin* plugin)
const QList<MapHandlerGen*>& maps = view->getLinkedMaps();
foreach(MapHandlerGen* mh, maps)
{
connect(mh, SIGNAL(attributeModified(unsigned int, QString)), this, SLOT(attributeModified(unsigned int, QString)));
connect(mh, SIGNAL(connectivityModified()), this, SLOT(connectivityModified()));
PerMapParameterSet* p = new PerMapParameterSet(mh);
registerShader(p->m_renderTopo->shader1());
registerShader(p->m_renderTopo->shader2());
......@@ -119,6 +121,8 @@ void RenderTopoSurfacePlugin::viewUnlinked(View* view, Plugin* plugin)
QHash<QString, PerMapParameterSet*>::const_iterator i = params->perMap.constBegin();
while (i != params->perMap.constEnd())
{
disconnect(i.value()->mh, SIGNAL(attributeModified(unsigned int, QString)), this, SLOT(attributeModified(unsigned int, QString)));
disconnect(i.value()->mh, SIGNAL(connectivityModified()), this, SLOT(connectivityModified()));
unregisterShader(i.value()->m_renderTopo->shader1());
unregisterShader(i.value()->m_renderTopo->shader2());
delete i.value();
......@@ -146,10 +150,10 @@ void RenderTopoSurfacePlugin::mapLinked(MapHandlerGen* m)
connect(m, SIGNAL(connectivityModified()), this, SLOT(connectivityModified()));
ParameterSet* params = h_viewParams[view];
PerMapParameterSet* p = new PerMapParameterSet(m);
registerShader(p->m_renderTopo->shader1());
registerShader(p->m_renderTopo->shader2());
params->perMap.insert(m->getName(), p);
PerMapParameterSet* perMap = new PerMapParameterSet(m);
registerShader(perMap->m_renderTopo->shader1());
registerShader(perMap->m_renderTopo->shader2());
params->perMap.insert(m->getName(), perMap);
if(params->selectedMap == NULL || params->perMap.count() == 1)
changeSelectedMap(view, m);
else
......@@ -165,7 +169,10 @@ void RenderTopoSurfacePlugin::mapUnlinked(MapHandlerGen* m)
disconnect(m, SIGNAL(connectivityModified()), this, SLOT(connectivityModified()));
ParameterSet* params = h_viewParams[view];
delete params->perMap[m->getName()];
PerMapParameterSet* perMap = params->perMap[m->getName()];
unregisterShader(perMap->m_renderTopo->shader1());
unregisterShader(perMap->m_renderTopo->shader2());
delete perMap;
params->perMap.remove(m->getName());
if(params->selectedMap == m)
......
SCHNApps/bin/init.py
View file @ 06e06689
importPlugin = schnapps.loadPlugin("ImportSurface");
renderPlugin = schnapps.loadPlugin("Render");
renderVectorPlugin = schnapps.loadPlugin("RenderVector");
renderTopoSurfacePlugin = schnapps.loadPlugin("RenderTopoSurface");
differentialPropertiesPlugin = schnapps.loadPlugin("DifferentialProperties");
subdivisionPlugin = schnapps.loadPlugin("SubdivideSurface");
#renderVectorPlugin = schnapps.loadPlugin("RenderVector");
#renderTopoSurfacePlugin = schnapps.loadPlugin("RenderTopoSurface");
#differentialPropertiesPlugin = schnapps.loadPlugin("DifferentialProperties");
#subdivisionPlugin = schnapps.loadPlugin("SubdivideSurface");
surfaceDeformationPlugin = schnapps.loadPlugin("SurfaceDeformation");
obj = importPlugin.importFromFile("/home/kraemer/Media/Data/surface/lowRes/iphi_good_9k.off");
......@@ -11,11 +11,11 @@ obj = importPlugin.importFromFile("/home/kraemer/Media/Data/surface/lowRes/iphi_
v = schnapps.getView("view_0");
schnapps.linkViewAndPlugin(v.getName(), renderPlugin.getName());
schnapps.linkViewAndPlugin(v.getName(), renderVectorPlugin.getName());
schnapps.linkViewAndPlugin(v.getName(), renderTopoSurfacePlugin.getName());
#schnapps.linkViewAndPlugin(v.getName(), renderVectorPlugin.getName());
#schnapps.linkViewAndPlugin(v.getName(), renderTopoSurfacePlugin.getName());
schnapps.linkViewAndPlugin(v.getName(), surfaceDeformationPlugin.getName());
schnapps.linkViewAndMap(v.getName(), obj.getName());
differentialPropertiesPlugin.computeNormal(obj.getName());
differentialPropertiesPlugin.computeCurvature(obj.getName());
#differentialPropertiesPlugin.computeNormal(obj.getName());
#differentialPropertiesPlugin.computeCurvature(obj.getName());
SCHNApps/src/colorComboBox.cpp
View file @ 06e06689
......@@ -23,18 +23,15 @@ void ColorComboBox::populateList()
//QStringList colorNames = QColor::colorNames();
QStringList colorNames;
colorNames <<
"darkGreen" <<
"green" <<
"gray" <<
"red" <<
"white" <<
"green" <<
"blue" <<
"cyan "<<
"darkMagenta" <<
"magenta" <<
"yellow" <<
"darkRed" <<
"black" <<
"magenta";
"gray" <<
"white" <<
"black";
for (int i = 0; i < colorNames.size(); ++i) {
QColor color(colorNames[i]);
......
ThirdParty/OpenNL/CMakeOptions.txt
View file @ 06e06689
......@@ -55,7 +55,8 @@ SET(CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/OpenNL/CMakeModules)
# (with a single underscore) rather than -DAdd__ (with two
# underscores). If you got two underscores, remove the
# second one, make clean and re-make SuperLU.
#SET(USE_SUPERLU TRUE)
SET(USE_SUPERLU TRUE)
find_package(SuperLU REQUIRED)
# Edit these lines to match your installation
#SET(SUPERLU_HOME /home/yourself/SuperLU_4.0 )
......
ThirdParty/OpenNL/src/CMakeLists.txt
View file @ 06e06689
......@@ -20,8 +20,8 @@ ENDIF(USE_ATLAS)
IF(USE_SUPERLU)
ADD_DEFINITIONS(-DNL_USE_SUPERLU)
SET(SUPERLU_INCS ${SUPERLU_HOME}/SRC)
INCLUDE_DIRECTORIES(${SUPERLU_INCS})
# SET(SUPERLU_INCS ${SUPERLU_HOME}/SRC)
INCLUDE_DIRECTORIES(${SUPERLU_INCLUDE_DIRS})
ENDIF(USE_SUPERLU)
IF(USE_CHOLMOD)
......
ThirdParty/OpenNL/src/NL/nl.h
View file @ 06e06689
......@@ -121,9 +121,6 @@ typedef void* NLContext ;
#define NL_ELAPSED_TIME 0x10a
#define NL_PRECONDITIONER 0x10b
//#define NL_DIRECT 0x10c
//#define NL_FACTORIZED 0x10d
/* Solvers */
#define NL_CG 0x200
......@@ -133,7 +130,6 @@ typedef void* NLContext ;
#define NL_PERM_SUPERLU_EXT 0x211
#define NL_SYMMETRIC_SUPERLU_EXT 0x212
#define NL_SOLVER_USER 0x213
#define NL_CHOLMOD_EXT 0x214
#define NL_CNC_FLOAT_CRS 0x220
......
ThirdParty/OpenNL/src/NL/nl_api.c
View file @ 06e06689
......@@ -517,8 +517,11 @@ void nlEndMatrix() {
) ;
}
if(nlCurrentContext->solver == NL_CHOLMOD_EXT && // or any other direct solver
nlCurrentContext->direct_solver_context == NULL) {
if((nlCurrentContext->solver == NL_CHOLMOD_EXT || // or any other direct solver
nlCurrentContext->solver == NL_SUPERLU_EXT ||
nlCurrentContext->solver == NL_PERM_SUPERLU_EXT ||
nlCurrentContext->solver == NL_SYMMETRIC_SUPERLU_EXT) &&
nlCurrentContext->direct_solver_context == NULL) {
nlCurrentContext->factorize_func() ;
}
}
......@@ -567,9 +570,9 @@ void nlEndRow() {
NLRowColumn* al = &nlCurrentContext->al ;
NLRowColumn* xl = &nlCurrentContext->xl ;
NLSparseMatrix* M = &nlCurrentContext->M ;
NLdouble* b = nlCurrentContext->b ;
NLuint nf = af->size ;
NLuint nl = al->size ;
NLdouble* b = nlCurrentContext->b ;
NLuint nf = af->size ;
NLuint nl = al->size ;
NLuint current_row = nlCurrentContext->current_row ;
NLuint i ;
NLuint j ;
......@@ -674,15 +677,15 @@ void nlEnd(NLenum prim) {
/* nlSolve() driver routine */
NLboolean nlSolve() {
NLboolean result ;
NLdouble start_time = nlCurrentTime() ;
nlCheckState(NL_STATE_SYSTEM_CONSTRUCTED) ;
nlCurrentContext->elapsed_time = 0 ;
NLboolean result ;
NLdouble start_time = nlCurrentTime() ;
nlCheckState(NL_STATE_SYSTEM_CONSTRUCTED) ;
nlCurrentContext->elapsed_time = 0 ;
result = nlCurrentContext->solver_func() ;
nlVectorToVariables() ;
nlVectorToVariables() ;
nlCurrentContext->elapsed_time = nlCurrentTime() - start_time ;
nlTransition(NL_STATE_SYSTEM_CONSTRUCTED, NL_STATE_SOLVED) ;
return result ;
nlTransition(NL_STATE_SYSTEM_CONSTRUCTED, NL_STATE_SOLVED) ;
return result ;
}
/************************************************************************/
......@@ -717,7 +720,10 @@ void nlReset(NLboolean keep_matrix) {
nlUnlockVariable(i);
}
nlCurrentContext->matrix_already_set = NL_FALSE ;
if(nlCurrentContext->solver == NL_CHOLMOD_EXT) { // or any other direct solver
if( nlCurrentContext->solver == NL_CHOLMOD_EXT || // or any other direct solver
nlCurrentContext->solver == NL_SUPERLU_EXT ||
nlCurrentContext->solver == NL_PERM_SUPERLU_EXT ||
nlCurrentContext->solver == NL_SYMMETRIC_SUPERLU_EXT) {
nlCurrentContext->clear_factor_func() ;
}
}
......
ThirdParty/OpenNL/src/NL/nl_cholmod.c
View file @ 06e06689
......@@ -57,8 +57,8 @@
typedef struct {
cholmod_common c ;
cholmod_factor* cL ;
cholmod_dense* cb ;
cholmod_factor* cL ; // factor
cholmod_dense* cb ; // right-hand side
} cholmod_context ;
......@@ -66,9 +66,9 @@ typedef struct {
NLboolean nlFactorize_CHOLMOD() {
/* OpenNL Context */
NLSparseMatrix* M = &(nlCurrentContext->M) ;
NLuint n = nlCurrentContext->n ;
NLuint nnz = nlSparseMatrixNNZ(M) ; /* Number of Non-Zero coeffs */
NLSparseMatrix* M = &(nlCurrentContext->M) ;
NLuint n = nlCurrentContext->n ;
NLuint nnz = nlSparseMatrixNNZ(M) ; /* Number of Non-Zero coeffs */
cholmod_context* context = (cholmod_context*)(nlCurrentContext->direct_solver_context) ;
if(context == NULL) {
......@@ -87,13 +87,13 @@ NLboolean nlFactorize_CHOLMOD() {
nl_assert(M->storage & NL_MATRIX_STORE_COLUMNS) ;
nl_assert(M->m == M->n) ;
cholmod_start(&(context->c)) ;
/*
* Step 1: convert matrix M into CHOLMOD compressed column representation
* ----------------------------------------------------------------------
*/
cholmod_start(&(context->c)) ;
cA = cholmod_allocate_sparse(n, n, nnz, NL_FALSE, NL_TRUE, -1, CHOLMOD_REAL, &(context->c)) ;
int* colptr = (int*)(cA->p) ;
int* rowind = (int*)(cA->i) ;
......@@ -137,7 +137,7 @@ NLboolean nlSolve_CHOLMOD() {
/* OpenNL Context */
NLdouble* b = nlCurrentContext->b ;
NLdouble* x = nlCurrentContext->x ;
NLuint n = nlCurrentContext->n ;
NLuint n = nlCurrentContext->n ;
cholmod_context* context = (cholmod_context*)(nlCurrentContext->direct_solver_context) ;
nl_assert(context != NULL) ;
......@@ -154,9 +154,8 @@ NLboolean nlSolve_CHOLMOD() {
*/
double* cbx = (double*)(context->cb->x) ;
for(i = 0; i < n; i++) {
for(i = 0; i < n; i++)
cbx[i] = b[i] ;
}
/*
* Step 2: solve
......@@ -207,4 +206,9 @@ NLboolean nlSolve_CHOLMOD() {
return NL_FALSE ;
}
NLboolean nlClear_CHOLMOD() {
nl_assert_not_reached ;
return NL_FALSE ;
}
#endif
ThirdParty/OpenNL/src/NL/nl_context.c
View file @ 06e06689
......@@ -108,7 +108,10 @@ void nlDeleteContext(NLContext context_in) {
if(context->alloc_b) {
NL_DELETE_ARRAY(context->b) ;
}
if(context->solver == NL_CHOLMOD_EXT) { // or any other direct solver
if( context->solver == NL_CHOLMOD_EXT || // or any other direct solver
context->solver == NL_SUPERLU_EXT ||
context->solver == NL_PERM_SUPERLU_EXT ||
context->solver == NL_SYMMETRIC_SUPERLU_EXT) {
context->clear_factor_func() ;
}
......@@ -268,10 +271,12 @@ NLboolean nlDefaultFactorize() {
case NL_CNC_FLOAT_ELL:
case NL_CNC_DOUBLE_ELL:
case NL_CNC_FLOAT_HYB:
case NL_CNC_DOUBLE_HYB:
case NL_CNC_DOUBLE_HYB: break ;
case NL_SUPERLU_EXT:
case NL_PERM_SUPERLU_EXT:
case NL_SYMMETRIC_SUPERLU_EXT: break ;
case NL_SYMMETRIC_SUPERLU_EXT: {
result = nlFactorize_SUPERLU() ;
} break ;
case NL_CHOLMOD_EXT: {
result = nlFactorize_CHOLMOD() ;
} break ;
......@@ -293,10 +298,12 @@ void nlDefaultClearFactor() {
case NL_CNC_FLOAT_ELL:
case NL_CNC_DOUBLE_ELL:
case NL_CNC_FLOAT_HYB:
case NL_CNC_DOUBLE_HYB:
case NL_CNC_DOUBLE_HYB: break ;
case NL_SUPERLU_EXT:
case NL_PERM_SUPERLU_EXT:
case NL_SYMMETRIC_SUPERLU_EXT: break ;
case NL_SYMMETRIC_SUPERLU_EXT: {
nlClear_SUPERLU() ;
} break ;
case NL_CHOLMOD_EXT: {
nlClear_CHOLMOD() ;
} break ;
......
ThirdParty/OpenNL/src/NL/nl_superlu.c
View file @ 06e06689
......@@ -54,175 +54,232 @@
#include <slu_cdefs.h>
#include <supermatrix.h>
/* Note: SuperLU is difficult to call, but it is worth it. */
/* Here is a driver inspired by A. Sheffer's "cow flattener". */
typedef struct {
superlu_options_t options ;
SuperLUStat_t stat ;
SuperMatrix L ;
SuperMatrix U ;
NLint* perm_c ;
NLint* perm_r;
} superlu_context ;
NLboolean nlFactorize_SUPERLU() {
/* OpenNL Context */
NLSparseMatrix* M = &(nlCurrentContext->M) ;
NLuint n = nlCurrentContext->n ;
NLuint nnz = nlSparseMatrixNNZ(M) ; /* Number of Non-Zero coeffs */
superlu_context* context = (superlu_context*)(nlCurrentContext->direct_solver_context) ;
if(context == NULL) {
nlCurrentContext->direct_solver_context = malloc(sizeof(superlu_context)) ;
context = (superlu_context*)(nlCurrentContext->direct_solver_context) ;
}
/* SUPERLU variables */
NLint info ;
SuperMatrix A, AC ;
/* Temporary variables */
NLRowColumn* Ci = NULL ;
NLuint i,j,count ;
/* Sanity checks */
nl_assert(!(M->storage & NL_MATRIX_STORE_SYMMETRIC)) ;
nl_assert(M->storage & NL_MATRIX_STORE_ROWS) ;
nl_assert(M->m == M->n) ;
set_default_options(&(context->options)) ;
switch(nlCurrentContext->solver) {
case NL_SUPERLU_EXT: {
context->options.ColPerm = NATURAL ;
} break ;
case NL_PERM_SUPERLU_EXT: {
context->options.ColPerm = COLAMD ;
} break ;
case NL_SYMMETRIC_SUPERLU_EXT: {
context->options.ColPerm = MMD_AT_PLUS_A ;
context->options.SymmetricMode = YES ;
} break ;
default: {
nl_assert_not_reached ;
} break ;
}
StatInit(&(context->stat)) ;
/*
* Step 1: convert matrix M into SUPERLU compressed column representation
* ----------------------------------------------------------------------
*/
NLint* xa = NL_NEW_ARRAY(NLint, n+1) ;
NLdouble* a = NL_NEW_ARRAY(NLdouble, nnz) ;
NLint* asub = NL_NEW_ARRAY(NLint, nnz) ;
count = 0 ;
for(i = 0; i < n; i++) {
Ci = &(M->row[i]) ;
xa[i] = count ;
for(j = 0; j < Ci->size; j++) {
a[count] = Ci->coeff[j].value ;
asub[count] = Ci->coeff[j].index ;
count++ ;
}
}
xa[n] = nnz ;
dCreate_CompCol_Matrix(
&A, n, n, nnz, a, asub, xa,
SLU_NR, /* Row wise */
SLU_D, /* doubles */
SLU_GE /* general storage */
);
/*
* Step 2: factorize matrix
* ------------------------
*/
context->perm_c = NL_NEW_ARRAY(NLint, n) ;
context->perm_r = NL_NEW_ARRAY(NLint, n) ;
NLint* etree = NL_NEW_ARRAY(NLint, n) ;
get_perm_c(context->options.ColPerm, &A, context->perm_c) ;
sp_preorder(&(context->options), &A, context->perm_c, etree, &AC) ;
int panel_size = sp_ienv(1) ;
int relax = sp_ienv(2) ;
dgstrf(&(context->options),
&AC,
relax,
panel_size,
etree,
NULL,
0,
context->perm_c,
context->perm_r,
&(context->L),
&(context->U),
&(context->stat),
&info) ;
/*
* Step 3: cleanup
* ---------------
*/
NL_DELETE_ARRAY(xa) ;
NL_DELETE_ARRAY(a) ;
NL_DELETE_ARRAY(asub) ;
NL_DELETE_ARRAY(etree) ;
Destroy_SuperMatrix_Store(&A);
Destroy_CompCol_Permuted(&AC);
StatFree(&(context->stat));
return NL_TRUE ;
}
NLboolean nlSolve_SUPERLU() {
/* OpenNL Context */
NLSparseMatrix* M = &(nlCurrentContext->M) ;
NLdouble* b = nlCurrentContext->b ;
NLdouble* x = nlCurrentContext->x ;
/* Compressed Row Storage matrix representation */
NLuint n = nlCurrentContext->n ;
NLuint nnz = nlSparseMatrixNNZ(M) ; /* Number of Non-Zero coeffs */
NLint* xa = NL_NEW_ARRAY(NLint, n+1) ;
NLdouble* rhs = NL_NEW_ARRAY(NLdouble, n) ;
NLdouble* a = NL_NEW_ARRAY(NLdouble, nnz) ;
NLint* asub = NL_NEW_ARRAY(NLint, nnz) ;
/* Permutation vector */
NLint* perm_r = NL_NEW_ARRAY(NLint, n) ;
NLint* perm = NL_NEW_ARRAY(NLint, n) ;
/* SuperLU variables */
SuperMatrix A, B ; /* System */
SuperMatrix L, U ; /* Inverse of A */
NLint info ; /* status code */
DNformat *vals = NULL ; /* access to result */
double *rvals = NULL ; /* access to result */
/* SuperLU options and stats */
superlu_options_t options ;
SuperLUStat_t stat ;
/* Temporary variables */
NLRowColumn* Ri = NULL ;
NLuint i,jj,count ;
/* Sanity checks */
nl_assert(!(M->storage & NL_MATRIX_STORE_SYMMETRIC)) ;
nl_assert(M->storage & NL_MATRIX_STORE_ROWS) ;
nl_assert(M->m == M->n) ;
/*
* Step 1: convert matrix M into SuperLU compressed column
* representation.
* -------------------------------------------------------
*/
count = 0 ;
for(i=0; i<n; i++) {
Ri = &(M->row[i]) ;
xa[i] = count ;
for(jj=0; jj<Ri->size; jj++) {
a[count] = Ri->coeff[jj].value ;
asub[count] = Ri->coeff[jj].index ;
count++ ;
}
}
xa[n] = nnz ;
/* Save memory for SuperLU */
nlSparseMatrixClear(M) ;
/*
* Rem: SuperLU does not support symmetric storage.
* In fact, for symmetric matrix, what we need
* is a SuperLLt algorithm (SuperNodal sparse Cholesky),
* but it does not exist, anybody wants to implement it ?
* However, this is not a big problem (SuperLU is just
* a superset of what we really need.
*/
dCreate_CompCol_Matrix(
&A, n, n, nnz, a, asub, xa,
SLU_NR, /* Row_wise, no supernode */
SLU_D, /* doubles */
SLU_GE /* general storage */
);
/* Step 2: create vector */
dCreate_Dense_Matrix(
&B, n, 1, b, n,
SLU_DN, /* Fortran-type column-wise storage */
SLU_D, /* doubles */
SLU_GE /* general */
);
/* Step 3: set SuperLU options
* ------------------------------
*/
set_default_options(&options) ;
switch(nlCurrentContext->solver) {
case NL_SUPERLU_EXT: {
options.ColPerm = NATURAL ;
} break ;
case NL_PERM_SUPERLU_EXT: {
options.ColPerm = COLAMD ;
} break ;
case NL_SYMMETRIC_SUPERLU_EXT: {
options.ColPerm = MMD_AT_PLUS_A ;
options.SymmetricMode = YES ;