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attributeContainer.cpp 26.1 KB
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/*******************************************************************************
* CGoGN: Combinatorial and Geometric modeling with Generic N-dimensional Maps  *
* version 0.1                                                                  *
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* Copyright (C) 2009-2012, IGG Team, LSIIT, University of Strasbourg           *
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*                                                                              *
* This library is free software; you can redistribute it and/or modify it      *
* under the terms of the GNU Lesser General Public License as published by the *
* Free Software Foundation; either version 2.1 of the License, or (at your     *
* option) any later version.                                                   *
*                                                                              *
* This library is distributed in the hope that it will be useful, but WITHOUT  *
* ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or        *
* FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License  *
* for more details.                                                            *
*                                                                              *
* You should have received a copy of the GNU Lesser General Public License     *
* along with this library; if not, write to the Free Software Foundation,      *
* Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301 USA.           *
*                                                                              *
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* Web site: http://cgogn.unistra.fr/                                           *
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* Contact information: cgogn@unistra.fr                                        *
*                                                                              *
*******************************************************************************/
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#include <typeinfo>
#include <stdio.h>
#include <string.h>
#include <libxml/encoding.h>
#include <libxml/xmlwriter.h>
#include <iostream>

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#include "Container/attributeContainer.h"
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#include "Topology/generic/dart.h"
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namespace CGoGN
{

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AttributeContainer::AttributeContainer() :
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	m_currentBrowser(NULL),
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	m_orbit(0),
	m_nbAttributes(0),
	m_nbUnknown(0),
	m_size(0),
	m_maxSize(0),
	m_lineCost(0),
	m_attributes_registry_map(NULL)
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{
	m_holesBlocks.reserve(512);
}

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AttributeContainer::~AttributeContainer()
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{
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	for (unsigned int index = 0; index < m_tableAttribs.size(); ++index)
	{
		if (m_tableAttribs[index] != NULL)
			delete m_tableAttribs[index];
	}

	for (unsigned int index = 0; index < m_holesBlocks.size(); ++index)
	{
		if (m_holesBlocks[index] != NULL)
			delete m_holesBlocks[index];
	}

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}

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/**************************************
 *       INFO ABOUT ATTRIBUTES        *
 **************************************/

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unsigned int AttributeContainer::getAttributeIndex(const std::string& attribName) const
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{
	unsigned int index ;
	bool found = false ;
	for (index = 0; index < m_tableAttribs.size() && !found; ++index)
	{
		if(m_tableAttribs[index] != NULL && m_tableAttribs[index]->getName() == attribName)
			found = true ;
	}

	if (!found)
		return UNKNOWN;
	else
		return index - 1 ;
}

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const std::string& AttributeContainer::getAttributeName(unsigned int index) const
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{
	assert(index < m_tableAttribs.size() || !"getAttributeName: attribute index out of bounds");
	assert(m_tableAttribs[index] != NULL || !"getAttributeName: attribute does not exist");

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	return m_tableAttribs[index]->getName() ;
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}

template <typename T>
unsigned int AttributeContainer::getAttributeBlocksPointers(unsigned int attrIndex, std::vector<T*>& vect_ptr, unsigned int& byteBlockSize)
{
	assert(attrIndex < m_tableAttribs.size() || !"getAttributeBlocksPointers: attribute index out of bounds");
	assert(m_tableAttribs[attrIndex] != NULL || !"getAttributeBlocksPointers: attribute does not exist");

	AttributeMultiVector<T>* atm = dynamic_cast<AttributeMultiVector<T>*>(m_tableAttribs[attrIndex]);
	assert((atm != NULL) || !"getAttributeBlocksPointers: wrong type");
	return atm->getBlocksPointers(vect_ptr, byteBlockSize);
}

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unsigned int AttributeContainer::getAttributesNames(std::vector<std::string>& names) const
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{
	names.clear() ;
	names.reserve(m_nbAttributes) ;

	for (unsigned int i = 0; i < m_tableAttribs.size(); ++i)
	{
		if(m_tableAttribs[i] != NULL)
			names.push_back(m_tableAttribs[i]->getName()) ;
	}

	return m_nbAttributes ;
}

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unsigned int AttributeContainer::getAttributesTypes(std::vector<std::string>& types)
{
	types.clear() ;
	types.reserve(m_nbAttributes) ;

	for (unsigned int i = 0; i < m_tableAttribs.size(); ++i)
	{
		if(m_tableAttribs[i] != NULL)
			types.push_back(m_tableAttribs[i]->getTypeName()) ;
	}

	return m_nbAttributes ;
}

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/**************************************
 *        CONTAINER MANAGEMENT        *
 **************************************/

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void AttributeContainer::swap(AttributeContainer& cont)
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{
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	// swap everything but the orbit

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	m_tableAttribs.swap(cont.m_tableAttribs);
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	m_freeIndices.swap(cont.m_freeIndices);
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	m_holesBlocks.swap(cont.m_holesBlocks);
	m_tableBlocksWithFree.swap(cont.m_tableBlocksWithFree);
	m_tableBlocksEmpty.swap(cont.m_tableBlocksEmpty);
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	unsigned int temp = m_nbAttributes;
	m_nbAttributes = cont.m_nbAttributes;
	cont.m_nbAttributes = temp;

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	temp = m_nbUnknown ;
	m_nbUnknown = cont.m_nbUnknown ;
	cont.m_nbUnknown = temp ;

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	temp = m_size;
	m_size = cont.m_size;
	cont.m_size = temp;

	temp = m_maxSize;
	m_maxSize = cont.m_maxSize;
	cont.m_maxSize = temp;

	temp = m_lineCost;
	m_lineCost = cont.m_lineCost;
	cont.m_lineCost = temp;
}

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void AttributeContainer::clear(bool removeAttrib)
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{
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	m_size = 0;
 	m_maxSize = 0;
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		// raz des cases libres
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	for (std::vector<HoleBlockRef*>::iterator it = m_holesBlocks.begin(); it != m_holesBlocks.end(); ++it)
		delete (*it);
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	{ // add bracket just for scope of temporary vectors
		std::vector<HoleBlockRef*> bf;
		m_holesBlocks.swap(bf);
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		std::vector<unsigned int> bwf;
		m_tableBlocksWithFree.swap(bwf);
	}
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	// detruit les données
	for (std::vector<AttributeMultiVectorGen*>::iterator it = m_tableAttribs.begin(); it != m_tableAttribs.end(); ++it)
	{
		if ((*it) != NULL)
			(*it)->clear();
	}
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	// on enleve les attributs ?
	if (removeAttrib)
	{
		// nb a zero
		m_nbAttributes = 0;

		// detruit tous les attributs
		for (std::vector<AttributeMultiVectorGen*>::iterator it = m_tableAttribs.begin(); it != m_tableAttribs.end(); ++it)
		{
			if ((*it) != NULL)
				delete (*it);
		}
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		std::vector<AttributeMultiVectorGen*> amg;
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		m_tableAttribs.swap(amg);
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		std::vector<unsigned int> fi;
		m_freeIndices.swap(fi);
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	}
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}

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bool AttributeContainer::hasMarkerAttribute() const
{
	for (auto it = m_tableAttribs.begin(); it != m_tableAttribs.end(); ++it)
	{
		if ((*it) != NULL)
		{
			std::string strMarker = (*it)->getName().substr(0,6);
			if (strMarker=="marker")
				return true;
		}
	}
	return false;
}


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void AttributeContainer::compact(std::vector<unsigned int>& mapOldNew)
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{
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	mapOldNew.clear();
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	mapOldNew.resize(realEnd(),0xffffffff);
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//VERSION THAT PRESERVE ORDER OF ELEMENTS ?
//	unsigned int down = 0;
//	for (unsigned int occup = realBegin(); occup != realEnd(); next(occup))
//	{
//		mapOldNew[occup] = down;
//		copyLine(down,occup);
//		// copy ref counter
//		setNbRefs(down,getNbRefs(occup));
//		down++;
//	}

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	// fill the holes with data & create the map Old->New
	unsigned int up = realRBegin();
	unsigned int down = 0;
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	while (down < up)
	{
		if (!used(down))
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		{
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			mapOldNew[up] = down;
			// copy data
			copyLine(down,up);
			// copy ref counter
			setNbRefs(down,getNbRefs(up));
			// set next element to catch for hole filling
			realRNext(up);
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		}
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		down++;
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	}
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	// end of table = nb elements
	m_maxSize = m_size;
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	// no more blocks empty
	m_tableBlocksEmpty.clear();
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	// only the last block has free indices
	m_tableBlocksWithFree.clear();

	// compute nb block full
	unsigned int nbb = m_size / _BLOCKSIZE_;
	// update holeblock
	for (unsigned int i=0; i<nbb; ++i)
		m_holesBlocks[i]->compressFull(_BLOCKSIZE_);

	//update last holeblock
	unsigned int nbe = m_size % _BLOCKSIZE_;
	if (nbe != 0)
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	{
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		m_holesBlocks[nbb]->compressFull(nbe);
		m_tableBlocksWithFree.push_back(nbb);
		nbb++;
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	}

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	// free memory and resize
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	for (int i = m_holesBlocks.size() - 1; i > int(nbb); --i)
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		delete m_holesBlocks[i];
	m_holesBlocks.resize(nbb);

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	// release unused data memory
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	for(unsigned int j = 0; j < m_tableAttribs.size(); ++j)
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	{
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		if (m_tableAttribs[j] != NULL)
			m_tableAttribs[j]->setNbBlocks(m_holesBlocks.size());
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	}
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}

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/**************************************
 *          LINES MANAGEMENT          *
 **************************************/
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//unsigned int AttributeContainer::insertLine()
//{
//	// if no more rooms
//	if (m_tableBlocksWithFree.empty())
//	{
//		HoleBlockRef* ptr = new HoleBlockRef();					// new block
//		m_tableBlocksWithFree.push_back(m_holesBlocks.size());	// add its future position to block_free
//		m_holesBlocks.push_back(ptr);							// and add it to block table

//		for(unsigned int i = 0; i < m_tableAttribs.size(); ++i)
//		{
//			if (m_tableAttribs[i] != NULL)
//				m_tableAttribs[i]->addBlock();					// add a block to every attribute
//		}
//	}

//	// get the first free block index (last in vector)
//	unsigned int bf = m_tableBlocksWithFree.back();
//	// get the block
//	HoleBlockRef* block = m_holesBlocks[bf];

//	// add new element in block and compute index
//	unsigned int ne = block->newRefElt(m_maxSize);
//	unsigned int index = _BLOCKSIZE_ * bf + ne;

//	// if no more room in block remove it from free_blocks
//	if (block->full())
//		m_tableBlocksWithFree.pop_back();

//	++m_size;

////	initLine(index);

//	return index;
//}


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unsigned int AttributeContainer::insertLine()
{
	// if no more rooms
	if (m_tableBlocksWithFree.empty())
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	{
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		HoleBlockRef* ptr = new HoleBlockRef();					// new block
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		unsigned int numBlock = m_holesBlocks.size();
		m_tableBlocksWithFree.push_back(numBlock);	// add its future position to block_free
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		m_holesBlocks.push_back(ptr);							// and add it to block table

		for(unsigned int i = 0; i < m_tableAttribs.size(); ++i)
		{
			if (m_tableAttribs[i] != NULL)
				m_tableAttribs[i]->addBlock();					// add a block to every attribute
		}
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		// inc nb of elements
		++m_size;

		// add new element in block and compute index

		unsigned int ne = ptr->newRefElt(m_maxSize);
		return _BLOCKSIZE_ * numBlock + ne;
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	}
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	// else
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	// get the first free block index (last in vector)
	unsigned int bf = m_tableBlocksWithFree.back();
	// get the block
	HoleBlockRef* block = m_holesBlocks[bf];

	// add new element in block and compute index
	unsigned int ne = block->newRefElt(m_maxSize);
	unsigned int index = _BLOCKSIZE_ * bf + ne;

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	if (ne == _BLOCKSIZE_-1)
	{
		if (bf == (m_holesBlocks.size()-1))
		{
			// we are filling the last line of capacity
			HoleBlockRef* ptr = new HoleBlockRef();					// new block
			unsigned int numBlock = m_holesBlocks.size();
			m_tableBlocksWithFree.back() = numBlock;
			m_tableBlocksWithFree.push_back(bf);
			m_holesBlocks.push_back(ptr);

			for(unsigned int i = 0; i < m_tableAttribs.size(); ++i)
			{
				if (m_tableAttribs[i] != NULL)
					m_tableAttribs[i]->addBlock();					// add a block to every attribute
			}
		}
	}

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	// if no more room in block remove it from free_blocks
	if (block->full())
		m_tableBlocksWithFree.pop_back();

	++m_size;
	return index;
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}

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void AttributeContainer::removeLine(unsigned int index)
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{
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	unsigned int bi = index / _BLOCKSIZE_;
	unsigned int j = index % _BLOCKSIZE_;
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	HoleBlockRef* block = m_holesBlocks[bi];
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	if (block->used(j))
	{
		if (block->full())		// block has no free elements before removal
			m_tableBlocksWithFree.push_back(bi);
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		block->removeElt(j);
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		--m_size;
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		if (block->empty())		// block is empty after removal
			m_tableBlocksEmpty.push_back(bi);
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	}
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	else
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		CGoGNerr << "Error removing non existing index " << index << CGoGNendl;
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}

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/**************************************
 *            SAVE & LOAD             *
 **************************************/
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//
//bool AttributeContainer::loadXmlBWF(xmlNodePtr node)
//{
//	xmlChar* prop = xmlGetProp(node, BAD_CAST "nb");
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//	unsigned int nb = atoi((char*)prop);
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//	m_tableBlocksWithFree.clear();
//
//	// charge et cree les  attributs
//	for (xmlNode* x_node = node->children; x_node != NULL; x_node = x_node->next)
//	{
//		unsigned int ind = atoi((char*)(xmlNodeGetContent(x_node)));
//		m_tableBlocksWithFree.push_back(ind);
//	}
//	if (m_tableBlocksWithFree.size() != nb)
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//	{
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//		CGoGNerr <<"Erreur lecture fichier XML incoherent"<< CGoGNendl;
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//		return false;
//	}
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//	return true;
//}
//
//bool AttributeContainer::loadXmlAN(xmlNodePtr node, unsigned int nbb)
//{
//	xmlChar* prop = xmlGetProp(node, BAD_CAST "nb");
////	unsigned int nb = atoi((char*)prop);
//	prop = xmlGetProp(node, BAD_CAST "sv");
////	unsigned int sv = atoi((char*)prop);
//
//	// Noooooooo!!!!
////	m_tableAttribs.resize(sv);
////	for (unsigned int i=0; i< sv; ++i)
////			m_tableAttribs[i]=NULL;
//
//	// charge et cree les  attributs
//	for (xmlNode* x_node = node->children; x_node != NULL; x_node = x_node->next)
//	{
//		prop = xmlGetProp(x_node, BAD_CAST "id");
////		unsigned int id = unsigned int(atoi((char*)prop);
//
//		prop = xmlGetProp(x_node, BAD_CAST "type");
//		// recupere l'attribut enregistrer par son type
//		if (m_attributes_registry_map !=NULL)
//		{
//			std::map<std::string, RegisteredBaseAttribute*>::iterator itAtt = m_attributes_registry_map->find(std::string((char*)prop));
//			if (itAtt == m_attributes_registry_map->end())
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//			{
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//				CGoGNout << "Skipping non registred attribute "<< std::string((char*)prop)<<CGoGNendl;
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//			}
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//			else
//			{
//				RegisteredBaseAttribute* ra = itAtt->second;
//				prop = xmlGetProp(x_node, BAD_CAST "name");
////				ra->addAttribute(*this, std::string((char*)prop), id);
//				AttributeMultiVectorGen* amvg = ra->addAttribute(*this, std::string((char*)prop));
//				amvg->setNbBlocks(nbb);
//			}
//		}
//		else
//		{
//			CGoGNerr << "Attribute Registry non initialized"<< CGoGNendl;
//			return false;
//		}
//	}
////	if (m_attribNameMap.size() != nb)
////	{
////		CGoGNerr << "Pb lecture attributs"<< CGoGNendl;
////		return false;
////	}
//	return true;
//}
//
//bool AttributeContainer::loadXmlDL(xmlNodePtr node)
//{
//	// charge et cree les  attributs
//	for (xmlNode* x_node = node->children; x_node != NULL; x_node = x_node->next)
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//	{
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//		// get index
//		xmlChar* prop = xmlGetProp(x_node, BAD_CAST "id");
//		unsigned int id = atoi((char*)prop);
//		// get & set nbref
//		prop = xmlGetProp(x_node, BAD_CAST "refs");
//		unsigned int nbr = atoi((char*)prop);
//		setNbRefs(id, nbr);
//
//		if (nbr > 0)
//		{
////			for (MapNameId::iterator it = m_attribNameMap.begin(); it != m_attribNameMap.end(); ++it)
////			{
////				prop = xmlGetProp(x_node, BAD_CAST (it->first).c_str());
////				// if name of data unkwown then error
////				if (prop == NULL)
////				{
////					CGoGNerr << "inconsistent xml file"<<CGoGNendl;
////					return false;
////				}
////				m_tableAttribs[it->second]->input(id, std::string((char*)prop));
////			}
//		}
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//	}
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//	return true;
//}
//
//void AttributeContainer::saveXml(xmlTextWriterPtr writer, unsigned int id)
//{
//	if (m_nbAttributes == 0)
//		return;
//
//	// noeud du container
//	int rc = xmlTextWriterStartElement(writer, BAD_CAST "Attributes_Container");
//	rc = xmlTextWriterWriteFormatAttribute(writer,  BAD_CAST "id","%u",id);
//	rc = xmlTextWriterWriteFormatAttribute(writer,  BAD_CAST "BlockSize","%u",_BLOCKSIZE_);
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//	rc = xmlTextWriterWriteFormatAttribute(writer,  BAD_CAST "size","%u",m_maxSize);
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//
//	// recuperer le nombre d'attributs
//	unsigned int nbAtt = m_nbAttributes;
//	unsigned int sizeVectAtt = m_tableAttribs.size();
//
//	// noeud avec la liste de attributs
//	rc = xmlTextWriterStartElement(writer, BAD_CAST "Attributes_Names");
//	rc = xmlTextWriterWriteFormatAttribute(writer,  BAD_CAST "nb","%u",nbAtt);
//	rc = xmlTextWriterWriteFormatAttribute(writer,  BAD_CAST "sv","%u",sizeVectAtt);
//
//	// recuperer les attributs dans la map et les sauver
////	for (std::map<std::string, unsigned int>::iterator it = m_attribNameMap.begin(); it!= m_attribNameMap.end(); ++it)
////	{
////		int rc = xmlTextWriterStartElement(writer, BAD_CAST "Attribute");
////		rc = xmlTextWriterWriteAttribute(writer,  BAD_CAST "name",BAD_CAST (it->first).c_str());
////		const std::string& str_type = m_tableAttribs[it->second]->getTypeName();
////		rc = xmlTextWriterWriteAttribute(writer,  BAD_CAST "type",BAD_CAST str_type.c_str());
////		rc = xmlTextWriterWriteFormatAttribute(writer,  BAD_CAST "id","%u",it->second);
////		rc = xmlTextWriterEndElement(writer);
////	}
//	// fin du noeud
//	rc = xmlTextWriterEndElement(writer);
//
//	// parcourir le container et sauver les lignes
//	rc = xmlTextWriterStartElement(writer, BAD_CAST "Data_Lines");
////	rc = xmlTextWriterWriteFormatAttribute(writer,  BAD_CAST "size","%u",m_maxSize);
//	for (unsigned int i = 0; i != m_maxSize; ++i)
//	{
//		unsigned int nbr = getNbRefs(i);
//		rc = xmlTextWriterStartElement(writer, BAD_CAST "Line");
//		rc = xmlTextWriterWriteFormatAttribute(writer,  BAD_CAST "id","%u",i);
//		rc = xmlTextWriterWriteFormatAttribute(writer,  BAD_CAST "refs","%u",nbr);
//		if (nbr > 0)
//		{
//			// tous les attributs de la ligne
////			for (MapNameId::iterator it = m_attribNameMap.begin(); it!= m_attribNameMap.end(); ++it)
////			{
////				std::string st_att = m_tableAttribs[it->second]->output(i);
////				rc = xmlTextWriterWriteAttribute(writer,(xmlChar*)( (it->first).c_str()), (xmlChar*)( st_att.c_str()));
////			}
//		}
//		// fin du noeud Line
//		rc = xmlTextWriterEndElement(writer);
//	}
//	// fin du noeud Data Lines
//	rc = xmlTextWriterEndElement(writer);
//
//	// fin du noeud Container
//	rc = xmlTextWriterEndElement(writer);
//}
//
//unsigned int AttributeContainer::getIdXmlNode(xmlNodePtr node)
//{
//	xmlChar *prop = xmlGetProp(node, BAD_CAST "id");
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//	unsigned int id = atoi((char*)prop);
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//	return id;
//}
//
//bool AttributeContainer::loadXml(xmlNodePtr node)
//{
//	xmlChar *prop = xmlGetProp(node, BAD_CAST "BlockSize");
//	unsigned int bs = atoi((char*)prop);
//
//	if (bs != _BLOCKSIZE_)
//	{
//		CGoGNerr << "Chargement impossible, tailles de block differentes: "<<_BLOCKSIZE_<<" / " << bs << CGoGNendl;
//		return false;
//	}
//
////	prop = xmlGetProp(node, BAD_CAST "id");
////	unsigned int id = atoi((char*)prop);
//
//	prop = xmlGetProp(node, BAD_CAST "size");
//	m_maxSize = atoi((char*)prop);
//
//	char* ANnode = (char*)"Attributes_Names";
//	char* DLnode= (char*)"Data_Lines";
//
//	// calcul le nombre de block et les alloue
//	unsigned int nbb = m_maxSize/_BLOCKSIZE_;
//	if (m_maxSize%_BLOCKSIZE_)
//			nbb++;
//
//	m_holesBlocks.resize(nbb);
//	for (unsigned int i=0; i<nbb; ++i)
//		m_holesBlocks[i] = new HoleBlockRef;
//
//	//load Attributes
//	xmlNode* cur = node->children;
//	while ( strcmp((char*)(cur->name),ANnode))
//		cur = cur->next;
//	loadXmlAN(cur,nbb);
//
//	cur = node->children;
//	while ( strcmp((char*)(cur->name),DLnode))
//		cur = cur->next;
//	loadXmlDL(cur);
//
//	// recreate free holes in blocks
//	nbb--;
//	for (unsigned int i = 0; i < nbb; ++i)
//	{
//		if (m_holesBlocks[i]->updateHoles(_BLOCKSIZE_))
//			m_tableBlocksWithFree.push_back(i);
//	}
//	m_holesBlocks[nbb]->updateHoles(m_maxSize - nbb * _BLOCKSIZE_);
//
//	return true;
//}
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void AttributeContainer::saveBin(CGoGNostream& fs, unsigned int id) const
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{
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	std::vector<AttributeMultiVectorGen*> bufferamv;
	bufferamv.reserve(m_tableAttribs.size());

	for(std::vector<AttributeMultiVectorGen*>::const_iterator it = m_tableAttribs.begin(); it != m_tableAttribs.end(); ++it)
	{
		if (*it != NULL)
		{
			const std::string& attName = (*it)->getName();
			std::string markName = attName.substr(0,7);
			if (markName != "marker_")
				bufferamv.push_back(*it);
		}
	}


	// en ascii id et les tailles
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	std::vector<unsigned int> bufferui;
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	bufferui.reserve(10);
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	bufferui.push_back(id);
	bufferui.push_back(_BLOCKSIZE_);
	bufferui.push_back(m_holesBlocks.size());
	bufferui.push_back(m_tableBlocksWithFree.size());
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//	bufferui.push_back(m_nbAttributes);
	bufferui.push_back(bufferamv.size());
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	bufferui.push_back(m_size);
	bufferui.push_back(m_maxSize);
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	bufferui.push_back(m_orbit);
	bufferui.push_back(m_nbUnknown);
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	fs.write(reinterpret_cast<const char*>(&bufferui[0]), bufferui.size()*sizeof(unsigned int));
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	unsigned int i = 0;
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	for(std::vector<AttributeMultiVectorGen*>::const_iterator it = bufferamv.begin(); it != bufferamv.end(); ++it)
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	{
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		if (*it != NULL)
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		{
			const std::string& attName = (*it)->getName();
			std::string markName = attName.substr(0,7);
			if (markName != "marker_")
				(*it)->saveBin(fs, i++);
		}
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		else
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		{
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			CGoGNerr << "PB saving, NULL ptr in m_tableAttribs" <<  CGoGNendl;
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			i++;
		}
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	}

	//en binaire les blocks de ref
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	for (std::vector<HoleBlockRef*>::const_iterator it = m_holesBlocks.begin(); it != m_holesBlocks.end(); ++it)
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		(*it)->saveBin(fs);
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	// les indices des blocks libres
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	fs.write(reinterpret_cast<const char*>(&m_tableBlocksWithFree[0]), m_tableBlocksWithFree.size() * sizeof(unsigned int));
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}

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unsigned int AttributeContainer::loadBinId(CGoGNistream& fs)
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{
	unsigned int id;
	fs.read(reinterpret_cast<char*>(&id), sizeof(unsigned int));
	return id;
}

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bool AttributeContainer::loadBin(CGoGNistream& fs)
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{
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	if (m_attributes_registry_map == NULL)
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	{
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		CGoGNerr << "Attribute Registry non initialized"<< CGoGNendl;
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		return false;
	}

	std::vector<unsigned int> bufferui;
	bufferui.resize(256);

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	fs.read(reinterpret_cast<char*>(&(bufferui[0])), 8*sizeof(unsigned int));	//WARNING 9 hard coded
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	unsigned int bs, szHB, szBWF, nbAtt;
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	bs = bufferui[0];
	szHB = bufferui[1];
	szBWF = bufferui[2];
	nbAtt = bufferui[3];
	m_size = bufferui[4];
	m_maxSize = bufferui[5];
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	m_orbit = bufferui[6];
	m_nbUnknown = bufferui[7];

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	if (bs != _BLOCKSIZE_)
	{
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		CGoGNerr << "Loading unavailable, different block sizes: "<<_BLOCKSIZE_<<" / " << bs << CGoGNendl;
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		return false;
	}

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	for (unsigned int j = 0; j < nbAtt; ++j)
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	{
		std::string nameAtt;
		std::string typeAtt;
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		/*unsigned int id = */AttributeMultiVectorGen::loadBinInfos(fs,nameAtt, typeAtt);
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		std::map<std::string, RegisteredBaseAttribute*>::iterator itAtt = m_attributes_registry_map->find(typeAtt);
		if (itAtt == m_attributes_registry_map->end())
		{
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			CGoGNout << "Skipping non registred attribute of type name"<< typeAtt <<CGoGNendl;
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			AttributeMultiVectorGen::skipLoadBin(fs);
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		}
		else
		{
			RegisteredBaseAttribute* ra = itAtt->second;
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			AttributeMultiVectorGen* amvg = ra->addAttribute(*this, nameAtt);
			amvg->loadBin(fs);
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		}
	}

	m_holesBlocks.resize(szHB);

	// blocks
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	for (unsigned int i = 0; i < szHB; ++i)
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	{
		m_holesBlocks[i] = new HoleBlockRef;
		m_holesBlocks[i]->loadBin(fs);
	}

	// les indices des blocks libres
	m_tableBlocksWithFree.resize(szBWF);
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	fs.read(reinterpret_cast<char*>(&(m_tableBlocksWithFree[0])), szBWF*sizeof(unsigned int));
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	return true;
}

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void  AttributeContainer::copyFrom(const AttributeContainer& cont)
{
// 	clear is done from the map

	m_size = cont.m_size;
	m_maxSize = cont.m_maxSize;
	m_orbit = cont.m_orbit;
	m_nbUnknown = cont.m_nbUnknown;
	m_nbAttributes = cont.m_nbAttributes;
	m_lineCost = cont.m_lineCost;

	// blocks
	unsigned int sz = cont.m_holesBlocks.size();
	m_holesBlocks.resize(sz);
	for (unsigned int i = 0; i < sz; ++i)
		m_holesBlocks[i] = new HoleBlockRef(*(cont.m_holesBlocks[i]));

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	//  free indices
	sz = cont.m_freeIndices.size();
	m_freeIndices.resize(sz);
	for (unsigned int i = 0; i < sz; ++i)
		m_freeIndices[i] = cont.m_freeIndices[i];

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	// blocks with free
	sz = cont.m_tableBlocksWithFree.size();
	m_tableBlocksWithFree.resize(sz);
	for (unsigned int i = 0; i < sz; ++i)
		m_tableBlocksWithFree[i] = cont.m_tableBlocksWithFree[i];

	// empty blocks
	sz = cont.m_tableBlocksEmpty.size();
	m_tableBlocksEmpty.resize(sz);
	for (unsigned int i = 0; i < sz; ++i)
		m_tableBlocksEmpty[i] = cont.m_tableBlocksEmpty[i];

	//attributes (warning attribute can have different numbers than in original)
	m_tableAttribs.reserve(m_nbAttributes);
	sz = cont.m_tableAttribs.size();
	for (unsigned int i = 0; i < sz; ++i)
	{
		if (cont.m_tableAttribs[i] != NULL)
		{
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			std::string sub = cont.m_tableAttribs[i]->getName().substr(0, 5);
			if (sub != "Mark_") // Mark leaved by
			{
				AttributeMultiVectorGen* ptr = cont.m_tableAttribs[i]->new_obj();
				ptr->setName(cont.m_tableAttribs[i]->getName());
				ptr->setOrbit(cont.m_tableAttribs[i]->getOrbit());
				ptr->setIndex(m_tableAttribs.size());
				ptr->setNbBlocks(cont.m_tableAttribs[i]->getNbBlocks());
				ptr->copy(cont.m_tableAttribs[i]);
				m_tableAttribs.push_back(ptr);
			}
			else
			{
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				// get id of thread
				const std::string& str = cont.m_tableAttribs[i]->getName();
				unsigned int thId = (unsigned int)(str[5]-'0');
				if (str.size()==7)
					thId = 10*thId +  (unsigned int)(sub[6]-'0');
				// Mark always at the begin, because called after clear
				AttributeMultiVectorGen* ptr = m_tableAttribs[thId];
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				ptr->setNbBlocks(cont.m_tableAttribs[i]->getNbBlocks());
				ptr->copy(cont.m_tableAttribs[i]);
			}
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		}
	}
}

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void AttributeContainer::dumpCSV() const
{
	CGoGNout << "Name ; ;";
	for (unsigned int i = 0; i < m_tableAttribs.size(); ++i)
	{
		if (m_tableAttribs[i] != NULL)
		{
			CGoGNout << m_tableAttribs[i]->getName() << " ; ";
		}
	}
	CGoGNout << CGoGNendl;
	CGoGNout << "Type  ; ;";
	for (unsigned int i = 0; i < m_tableAttribs.size(); ++i)
	{
		if (m_tableAttribs[i] != NULL)
		{
			CGoGNout << m_tableAttribs[i]->getTypeName() << " ; ";
		}
	}
	CGoGNout << CGoGNendl;
	CGoGNout << "line ; refs ;";
	for (unsigned int i = 0; i < m_tableAttribs.size(); ++i)
	{
		if (m_tableAttribs[i] != NULL)
		{
			CGoGNout << "value;";
		}
	}
	CGoGNout << CGoGNendl;

	for (unsigned int l=this->begin(); l!= this->end(); this->next(l))
	{
		CGoGNout << l << " ; "<< this->getNbRefs(l)<< " ; ";
		for (unsigned int i = 0; i < m_tableAttribs.size(); ++i)
		{
			if (m_tableAttribs[i] != NULL)
			{
				m_tableAttribs[i]->dump(l);
				CGoGNout << " ; ";
			}
		}
		CGoGNout << CGoGNendl;
	}
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	CGoGNout << CGoGNendl;
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}

void AttributeContainer::dumpByLines() const
{
	CGoGNout << "Container of "<<orbitName(this->getOrbit())<< CGoGNendl;
	for (unsigned int i = 0; i < m_tableAttribs.size(); ++i)
	{
		if (m_tableAttribs[i] != NULL)
		{
			CGoGNout << "Name: "<< m_tableAttribs[i]->getName();
			CGoGNout << " / Type: "<< m_tableAttribs[i]->getTypeName();
			for (unsigned int l=this->begin(); l!= this->end(); this->next(l))
			{
				CGoGNout << l << " ; ";
				m_tableAttribs[i]->dump(l);
				CGoGNout << CGoGNendl;
			}

		}

	}
}



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}