Commit bd922c6a authored by vpodpecan's avatar vpodpecan
Browse files

updated bio3graph library and package data

parent 3cbea1e5
......@@ -11,59 +11,833 @@
"name": "Bio3graph"
}
},
{
"pk": 32,
"model": "workflows.category",
"fields": {
"uid": "e28eda39-1f18-4efe-9b7c-0d5f652f208f",
"parent": 26,
"workflow": null,
"user": null,
"order": 1,
"name": "Graph operations"
}
},
{
"pk": 165,
"model": "workflows.abstractwidget",
"fields": {
"category": 26,
"category": 32,
"treeview_image": "",
"name": "Biomine graph visualizer",
"is_streaming": false,
"uid": "ede1a781-9faf-4b31-923f-2c475d13630c",
"interaction_view": "",
"image": "",
"package": "bio3graph",
"static_image": "BiomineVisualizer.png",
"post_interact_action": "",
"user": null,
"visualization_view": "bio3graph_biomine_visualizer",
"streaming_visualization_view": "",
"action": "bio3graph_biomine_visualizer",
"wsdl_method": "",
"wsdl": "",
"interactive": false,
"has_progress_bar": false,
"order": 1,
"description": "Biomine graph visualizer which is run as a Java applet."
}
},
{
"pk": 380,
"model": "workflows.abstractinput",
"fields": {
"widget": 165,
"name": "Biomine graph",
"short_name": "bmg",
"uid": "61d98ab2-512e-4a04-888b-5998378948a8",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "biomine_graph",
"parameter": false,
"order": 1,
"description": "Biomine graph as string."
}
},
{
"pk": 169,
"model": "workflows.abstractwidget",
"fields": {
"category": 32,
"treeview_image": "",
"name": "Colour relations",
"is_streaming": false,
"uid": "2ba518b9-b65f-4569-a7ea-0fc9a2ce98ea",
"interaction_view": "",
"image": "",
"package": "bio3graph",
"static_image": "",
"post_interact_action": "",
"user": null,
"visualization_view": "",
"streaming_visualization_view": "",
"action": "bio3graph_colour_relations",
"wsdl_method": "",
"wsdl": "",
"interactive": false,
"has_progress_bar": false,
"order": 4,
"description": "Colours given relations in a given graph. Pink colour is used."
}
},
{
"pk": 387,
"model": "workflows.abstractinput",
"fields": {
"widget": 169,
"name": "Network",
"short_name": "nwx",
"uid": "7f63339c-031a-4957-8340-10326b6812d2",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "network",
"parameter": false,
"order": 1,
"description": "NetworkX data structure"
}
},
{
"pk": 388,
"model": "workflows.abstractinput",
"fields": {
"widget": 169,
"name": "Relations",
"short_name": "rls",
"uid": "93cb1318-763a-435d-9304-a33e3bf20299",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "relations",
"parameter": false,
"order": 2,
"description": "List of relations"
}
},
{
"pk": 189,
"model": "workflows.abstractoutput",
"fields": {
"widget": 169,
"name": "Network",
"short_name": "nwx",
"variable": "network",
"uid": "d893541b-3d81-41e9-85c0-8162faa66bc2",
"order": 1,
"description": "Network with relations coloured"
}
},
{
"pk": 161,
"model": "workflows.abstractwidget",
"fields": {
"category": 32,
"treeview_image": "",
"name": "Construct triplet network",
"is_streaming": false,
"uid": "116f578f-a366-4767-94fe-c08f9b40faec",
"interaction_view": "",
"image": "",
"package": "bio3graph",
"static_image": "",
"post_interact_action": "",
"user": null,
"visualization_view": "",
"streaming_visualization_view": "",
"action": "bio3graph_construct_triplet_network",
"wsdl_method": "",
"wsdl": "",
"interactive": false,
"has_progress_bar": false,
"order": 6,
"description": "Constructs a network from input triplets. Biomine's .bmg format as well as NetworkX data structure is produced."
}
},
{
"pk": 377,
"model": "workflows.abstractinput",
"fields": {
"widget": 161,
"name": "Triplets",
"short_name": "trs",
"uid": "7ee93f9a-f18e-45fa-a163-e2e1a92b9607",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "triplets",
"parameter": false,
"order": 1,
"description": "Input list of triplet objects"
}
},
{
"pk": 182,
"model": "workflows.abstractoutput",
"fields": {
"widget": 161,
"name": "NetworkX structure",
"short_name": "nwx",
"variable": "network_object",
"uid": "913cdcd0-6812-4f23-b4cf-33de8881bdc9",
"order": 1,
"description": "NetworkX graph data structure."
}
},
{
"pk": 166,
"model": "workflows.abstractwidget",
"fields": {
"category": 32,
"treeview_image": "",
"name": "Find transitive relations",
"is_streaming": false,
"uid": "689d4395-35d0-40eb-8355-60e3582abd8f",
"interaction_view": "",
"image": "",
"package": "bio3graph",
"static_image": "",
"post_interact_action": "",
"user": null,
"visualization_view": "",
"streaming_visualization_view": "",
"action": "bio3graph_find_redundant_transitive_relations",
"wsdl_method": "",
"wsdl": "",
"interactive": false,
"has_progress_bar": false,
"order": 12,
"description": "Finds redundant transitive relations in the new network (which are already present in the given existing network)."
}
},
{
"pk": 381,
"model": "workflows.abstractinput",
"fields": {
"widget": 166,
"name": "Initial network",
"short_name": "inw",
"uid": "c58c938f-e283-4900-8c66-589d9f470a1a",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "initial_network",
"parameter": false,
"order": 1,
"description": "Initial network as a NetworkX data structure."
}
},
{
"pk": 382,
"model": "workflows.abstractinput",
"fields": {
"widget": 166,
"name": "New network",
"short_name": "nnw",
"uid": "0c36aec5-7df4-4406-8d3c-d2c10cd876ed",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "new_network",
"parameter": false,
"order": 2,
"description": "New network as a NetworkX data structure."
}
},
{
"pk": 186,
"model": "workflows.abstractoutput",
"fields": {
"widget": 166,
"name": "Transitive relations",
"short_name": "trl",
"variable": "transitive_relations",
"uid": "36011dd6-a245-4a74-a2f4-12ef1ab306b9",
"order": 1,
"description": "List of discovered transitive relations."
}
},
{
"pk": 168,
"model": "workflows.abstractwidget",
"fields": {
"category": 32,
"treeview_image": "",
"name": "Incremental merge of networks",
"is_streaming": false,
"uid": "cbb4459d-7050-4674-855b-43b560c2134e",
"interaction_view": "",
"image": "",
"package": "bio3graph",
"static_image": "",
"post_interact_action": "",
"user": null,
"visualization_view": "",
"streaming_visualization_view": "",
"action": "bio3graph_incremental_network_merge",
"wsdl_method": "",
"wsdl": "",
"interactive": false,
"has_progress_bar": false,
"order": 14,
"description": "Merges an exiting network and a new network and colours the relations accordingly: old: black colour, overlap: green colour, new: red colour."
}
},
{
"pk": 385,
"model": "workflows.abstractinput",
"fields": {
"widget": 168,
"name": "Old network",
"short_name": "nwx",
"uid": "01213d24-dd22-425c-b52c-2ce051a5be4a",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "existing_network",
"parameter": false,
"order": 1,
"description": "Existing network as NetworkX data structure"
}
},
{
"pk": 386,
"model": "workflows.abstractinput",
"fields": {
"widget": 168,
"name": "New network",
"short_name": "nwx",
"uid": "2359acc6-7680-4a8f-aa75-34f1a216dd4d",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "new_network",
"parameter": false,
"order": 2,
"description": "New network as NetworkX data structure"
}
},
{
"pk": 188,
"model": "workflows.abstractoutput",
"fields": {
"widget": 168,
"name": "Merged network",
"short_name": "nwx",
"variable": "merged_network",
"uid": "1638484f-63c3-4dcf-85f5-60766e02a4ce",
"order": 1,
"description": "Merged and coloured network as NetworkX data structure"
}
},
{
"pk": 167,
"model": "workflows.abstractwidget",
"fields": {
"category": 32,
"treeview_image": "",
"name": "Remove relations",
"is_streaming": false,
"uid": "eb54fff9-e090-4823-b1d7-a3a2f9687706",
"interaction_view": "",
"image": "",
"package": "bio3graph",
"static_image": "",
"post_interact_action": "",
"user": null,
"visualization_view": "",
"streaming_visualization_view": "",
"action": "bio3graph_remove_relations",
"wsdl_method": "",
"wsdl": "",
"interactive": false,
"has_progress_bar": false,
"order": 20,
"description": "Removes given relations from a given network."
}
},
{
"pk": 383,
"model": "workflows.abstractinput",
"fields": {
"widget": 167,
"name": "NetworkX network",
"short_name": "nwx",
"uid": "a492ce92-d5bd-4428-b4b9-558b4dd25adf",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "network",
"parameter": false,
"order": 1,
"description": "NetworkX data structure"
}
},
{
"pk": 384,
"model": "workflows.abstractinput",
"fields": {
"widget": 167,
"name": "Relations",
"short_name": "rls",
"uid": "b42536ae-979b-441f-ad6d-e7a76e22db5e",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "relations",
"parameter": false,
"order": 2,
"description": "List of relations"
}
},
{
"pk": 187,
"model": "workflows.abstractoutput",
"fields": {
"widget": 167,
"name": "NetworkX network",
"short_name": "nwx",
"variable": "pruned_graph",
"uid": "2415dd69-a255-41bb-8183-cd1bf89ccf30",
"order": 1,
"description": "Network with given relations removed."
}
},
{
"pk": 170,
"model": "workflows.abstractwidget",
"fields": {
"category": 32,
"treeview_image": "",
"name": "Reset colours",
"is_streaming": false,
"uid": "68f84392-b207-4161-914b-ad0eb6a6b112",
"interaction_view": "",
"image": "",
"package": "bio3graph",
"static_image": "",
"post_interact_action": "",
"user": null,
"visualization_view": "",
"streaming_visualization_view": "",
"action": "bio3graph_reset_colours",
"wsdl_method": "",
"wsdl": "",
"interactive": false,
"has_progress_bar": false,
"order": 21,
"description": "Resets colours of all relations to black."
}
},
{
"pk": 389,
"model": "workflows.abstractinput",
"fields": {
"widget": 170,
"name": "Network",
"short_name": "nwx",
"uid": "5466b94f-9f1c-4121-88e5-3c5f15911684",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "network",
"parameter": false,
"order": 1,
"description": "NetworkX data structure"
}
},
{
"pk": 190,
"model": "workflows.abstractoutput",
"fields": {
"widget": 170,
"name": "Network",
"short_name": "nwx",
"variable": "network",
"uid": "b46568bd-6eea-4a42-a548-83adc8e6e955",
"order": 1,
"description": "NetworkX data structure"
}
},
{
"pk": 164,
"model": "workflows.abstractwidget",
"fields": {
"category": 32,
"treeview_image": "",
"name": "Transform Biomine to NetworkX",
"is_streaming": false,
"uid": "da67ace9-8a01-41ca-972f-e0bbf8ef595b",
"interaction_view": "",
"image": "",
"package": "bio3graph",
"static_image": "",
"post_interact_action": "",
"user": null,
"visualization_view": "",
"streaming_visualization_view": "",
"action": "bio3graph_biomine_to_networkx",
"wsdl_method": "",
"wsdl": "",
"interactive": false,
"has_progress_bar": false,
"order": 24,
"description": "Transforms a Biomine graph into a NetworkX data structure."
}
},
{
"pk": 379,
"model": "workflows.abstractinput",
"fields": {
"widget": 164,
"name": "Biomine graph",
"short_name": "bmg",
"uid": "ba70777c-5132-4bc8-acbf-5e6d76e6ef2c",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "biomine_graph",
"parameter": false,
"order": 1,
"description": "Biomine graph as string"
}
},
{
"pk": 185,
"model": "workflows.abstractoutput",
"fields": {
"widget": 164,
"name": "NetworkX network",
"short_name": "nwx",
"variable": "network_object",
"uid": "294ede06-c49a-4552-b6c4-3e0183fd8fcf",
"order": 1,
"description": "NetworkX network object"
}
},
{
"pk": 163,
"model": "workflows.abstractwidget",
"fields": {
"category": 32,
"treeview_image": "",
"name": "Transform NetworkX to Biomine ",
"is_streaming": false,
"uid": "07fea1f2-b681-47f7-8f46-fc0bc1c1df26",
"interaction_view": "",
"image": "",
"package": "bio3graph",
"static_image": "",
"post_interact_action": "",
"user": null,
"visualization_view": "",
"streaming_visualization_view": "",
"action": "bio3graph_networkx_to_biomine",
"wsdl_method": "",
"wsdl": "",
"interactive": false,
"has_progress_bar": false,
"order": 25,
"description": "Converts NetworkX data structure into a Biomine graph."
}
},
{
"pk": 378,
"model": "workflows.abstractinput",
"fields": {
"widget": 163,
"name": "NetworkX network",
"short_name": "nwx",
"uid": "1d882a63-116b-4cc4-9ed2-31fe067feb35",
"default": "",
"required": true,
"multi": false,
"parameter_type": null,
"variable": "network",
"parameter": false,
"order": 1,
"description": "NetworkX data object"
}
},
{
"pk": 184,
"model": "workflows.abstractoutput",
"fields": {
"widget": 163,
"name": "Biomine graph",
"short_name": "bmg",
"variable": "biomine_graph",
"uid": "6d4cc395-2bc9-45da-b4cb-a7e18c4247d5",
"order": 1,
"description": "Biomine graph as string"
}
},
{
"pk": 35,
"model": "workflows.category",