Debug CComLayer.

dev/c4.5_geo/card.ez

@@ -150,7 +150,7 @@ float pMutDesThre = 0.5;
 struct base* t1 = NULL;
 struct base* t2 = NULL;
 
-float* uniq_instances[2];
+//float* uniq_instances[2];
 float* mutation_step;
 unsigned uniq_cnt[2];
 
@@ -168,6 +168,8 @@ GenomeClass {
 
 \Before everything else function:
 {
+
+
   srand(globalRandomGenerator->get_seed());
   INSTEAD_EVAL_STEP = true;
 
@@ -182,10 +184,10 @@ GenomeClass {
   for( unsigned i=0 ; i<t1->hdr->attributes[t1->hdr->whichis_class]->no_values; i++ )
     printf("%s : %d\n",t1->hdr->attributes[t1->hdr->whichis_class]->values[i],t1->class_repartition[i]);
   
-  uniq_instances[0] = ba_compute_uniq_values(t2, 1, uniq_cnt+0);
-  uniq_instances[1] = ba_compute_uniq_values(t2, 2, uniq_cnt+1);
+  //uniq_instances[0] = ba_compute_uniq_values(t2, 1, uniq_cnt+0);
+  //uniq_instances[1] = ba_compute_uniq_values(t2, 2, uniq_cnt+1);
   
-  printf("%d %d\n",uniq_cnt[0],uniq_cnt[1]);
+  //printf("%d %d\n",uniq_cnt[0],uniq_cnt[1]);
 
   // allocating K packets 
   generate_k_fold(K,packets_size,t1,k_tables,t2);
@@ -239,6 +241,32 @@ GenomeClass {
 
   delete mins;
   delete maxs;
+
+  printf("%d\n",setVariable("u3",0));
+  if( setVariable("u3",0) ){
+    FILE* f = fopen("out/out.t","r");
+    char* indiv_text = (char*)malloc(sizeof(*indiv_text)*512);
+    fgets(indiv_text,512,f);
+    printf("%s\n",indiv_text);
+    fclose(f);
+
+    IndividualImpl i;
+    string* st = new string(indiv_text);
+    i.deserialize(*st);
+
+    delete st;
+    free(indiv_text);
+    
+    float fit = i.evaluate();
+    cTreeNode* root = generate_tree(i.x,t1,t2,GENOME_SIZE,GENE_SIZE);
+    struct base* tmp_table = table_from_genome(i.x,t1,t2,GENOME_SIZE,GENE_SIZE);
+    root->compute_coverage(tmp_table);
+    show_tree(tmp_table,root);
+    
+    printf("fitness of loaded individual is %f\n",fit);
+
+    exit(-1);
+  }
 }
 \end
 
@@ -261,6 +289,7 @@ GenomeClass {
 
   cTreeNode* root = generate_tree(best->x,t1,t2,GENOME_SIZE,GENE_SIZE);
   struct base* tmp_table = table_from_genome(best->x,t1,t2,GENOME_SIZE,GENE_SIZE);
+  root->compute_coverage(tmp_table);
   show_tree(tmp_table,root);
 
   ba_to_arff(tmp_table,"best_table.arff");
@@ -279,6 +308,8 @@ GenomeClass {
 #endif
 
 
+  FILE* f = fopen("out/out.t","w");
+  fprintf(f,"%s",best->serialize().c_str());
 
   struct base* k_tables_f[10];
   unsigned packets_size_f[10];
@@ -293,6 +324,7 @@ GenomeClass {
 }
 \end
 
+
 \GenomeClass::initialiser : 
 {
   for( unsigned i=0; i<GENOME_SIZE ; i+=GENE_SIZE ) {
@@ -474,7 +506,6 @@ GenomeClass {
     // then delete tmp tables
     ba_partial_copy_delete(tmp_learning_table);
     ba_partial_copy_delete(tmp_test_table);
-    
   }
 
   fitness_value = (((float)error) / t1->no_instances)*100;// + (((float)tree_size)/K);
@@ -509,10 +540,10 @@ LDFLAGS+= -lpq  -lm  -fopenmp ../c4.5_common/libc45.a $(LIBANTLR_DIR)/.libs/liba
   
   Elitism: Strong			//Weak or Strong
   Elite: 1
-  Print stats:1				//Default: 1
-  Generate csv stats file:0			
-  Generate gnuplot script:0
-  Generate R script:0
-  Plot stats:0				//Default: 0
+  Print stats:true				//Default: 1
+  Generate csv stats file:true			
+  Generate gnuplot script:false
+  Generate R script:false
+  Plot stats:false				//Default: 0
 \end
 	

examples/rastrigin/rastrigin.ez

@@ -17,7 +17,7 @@ __________________________________________________________*/
 #define PI 3.141592654
 
  
-float pMutPerGene=0.1;
+float pMutPerGene=0.3;
 
 
 \end
@@ -146,10 +146,10 @@ CPPFLAGS+=
 \end
 
 \Default run parameters :        // Please let the parameters appear in this order
-  Number of generations : 100     	// NB_GEN
-  Time limit: 0 			// In seconds, 0 to deactivate
-  Population size : 2000			//POP_SIZE
-  Offspring size : 1600 // 40% 
+  Number of generations : 9999999     	// NB_GEN
+  Time limit: 60 			// In seconds, 0 to deactivate
+  Population size : 3840			//POP_SIZE
+  Offspring size : 3840 // 40% 
   Mutation probability : 1       // MUT_PROB
   Crossover probability : 1      // XOVER_PROB
   Evaluator goal : minimise      // Maximise
@@ -163,15 +163,15 @@ CPPFLAGS+=
   Elitism: Strong			//Weak or Strong
   Elite: 1
   Print stats:true				//Default: 1
-  Generate csv stats file:false			
+  Generate csv stats file:true			
   Generate gnuplot script:false
   Generate R script:false
   Plot stats:false				//Default: 0
 
-  Remote island model: true
+  Remote island model: false
   IP file: ip.txt 			//File containing all the remote island's IP
 
-  Save population: true
+  Save population: false
   Start from file:false
 \end
 	

libeasea/CComUDPLayer.cpp

@@ -127,7 +127,7 @@ bool isLocalMachine(const char*  address){
 	inet_pton(AF_INET, address, &ipv4addr);
 	he = gethostbyaddr(&ipv4addr, sizeof ipv4addr, AF_INET);
 	//printf("Host name:%s\n",he->h_name);
-
+	
 	if(strlen(hostname)<strlen(he->h_name))
 		size = strlen(hostname);
 	else	

tpl/CUDA.tpl

@@ -665,11 +665,6 @@ LIBAESAE=$(EZ_PATH)libeasea/
 CXXFLAGS+=-g -Wall -O2 -I$(LIBAESAE)include -I$(EZ_PATH)boost
 LDFLAGS=$(EZ_PATH)boost/program_options.a $(LIBAESAE)libeasea.a -lpthread
 
-#USER MAKEFILE OPTIONS :
-\INSERT_MAKEFILE_OPTION#END OF USER MAKEFILE OPTIONS
-
-CPPFLAGS+= -I$(LIBAESAE)include -I$(EZ_PATH)boost
-NVCCFLAGS+= --compiler-options -fpermissive
 
 
 EASEA_SRC= EASEAIndividual.cpp
@@ -683,6 +678,13 @@ CUDA_SRC = EASEAIndividual.cu
 HDR= $(EASEA_HDR) $(EASEA_UC_HDR)
 OBJ= $(EASEA_SRC:.cpp=.o) $(EASEA_MAIN_HDR:.cpp=.o)
 
+#USER MAKEFILE OPTIONS :
+\INSERT_MAKEFILE_OPTION#END OF USER MAKEFILE OPTIONS
+
+CPPFLAGS+= -I$(LIBAESAE)include -I$(EZ_PATH)boost
+NVCCFLAGS+= --compiler-options -fpermissive
+
+
 BIN= EASEA
   
 all:$(BIN)